Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.7e-55 218.4 107 100.0
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 2.1e-47 192.2 107 86.9
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 3.0e-46 188.3 107 84.1
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 3.9e-46 188.0 107 83.2
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 8.6e-46 186.8 107 83.2
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.5e-45 186.0 107 81.3
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 2.5e-45 185.3 107 82.2
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 2.5e-45 185.3 107 81.3
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 3.3e-45 184.9 106 83.0
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 4.3e-45 184.5 107 81.3
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.2e-44 183.0 107 82.2
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 1.6e-44 182.6 107 83.2
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.6e-44 182.6 107 81.3
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.1e-44 182.2 105 83.8
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 2.1e-44 182.2 107 83.2
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 2.1e-44 182.2 107 82.2
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.1e-44 182.2 104 83.7
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 2.1e-44 182.2 107 81.3
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.8e-44 181.8 107 80.4
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.6e-44 181.4 107 79.4
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 4.7e-44 181.0 105 81.0
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 4.7e-44 181.0 107 79.4
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 6.2e-44 180.6 105 81.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 6.2e-44 180.6 107 82.2
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 8.1e-44 180.3 105 81.9
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 8.1e-44 180.3 105 81.0
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 8.1e-44 180.3 105 80.0
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-43 179.1 105 79.0
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.8e-43 179.1 105 79.0
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 3.1e-43 178.3 105 78.1
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.1e-43 178.3 105 78.1
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.0e-43 177.9 105 80.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.2e-43 177.6 105 78.1
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 8.9e-43 176.8 107 80.4
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 8.9e-43 176.8 105 79.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 80.0
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 80.0
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 2.0e-42 175.6 104 77.9
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 2.0e-42 175.6 107 76.6
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 79.0
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 2.6e-42 175.3 107 77.6
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 76.2
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 77.1
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 2.6e-42 175.3 107 75.7
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 3.4e-42 174.9 105 77.1
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 4.4e-42 174.5 103 80.6
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 4.4e-42 174.5 107 76.6
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 4.4e-42 174.5 105 79.0
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 75.7
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 5.8e-42 174.1 105 76.2
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 79.4
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 7.6e-42 173.7 107 74.8
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 9.9e-42 173.3 105 79.0
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 9.9e-42 173.3 105 79.0
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.3e-41 172.9 105 80.0
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 1.7e-41 172.6 107 74.8
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 1.7e-41 172.6 103 76.7
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 2.9e-41 171.8 105 77.1
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.9e-41 171.8 103 78.6
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 2.9e-41 171.8 107 78.5
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.9e-41 171.8 107 78.5
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 3.8e-41 171.4 105 75.2
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.8e-41 171.4 107 72.9
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 3.8e-41 171.4 107 79.4
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 4.9e-41 171.0 103 76.7
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 6.4e-41 170.6 105 76.2
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 6.4e-41 170.6 103 76.7
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 6.4e-41 170.6 107 73.8
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.4e-40 169.5 107 75.7
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.4e-40 169.5 107 74.8
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 1.9e-40 169.1 103 75.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.9e-40 169.1 101 76.2
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 3.2e-40 168.3 107 72.9
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 9.2e-40 166.8 107 72.9
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.6e-39 166.0 107 75.7
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 70.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 3.5e-39 164.9 104 75.0
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 72.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 6.0e-39 164.1 103 75.7
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 7.8e-39 163.7 103 75.7
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 70.5
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 72.4
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.7e-38 162.5 103 74.8
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.0e-38 161.8 107 72.9
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 3.0e-38 161.8 105 68.6
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 3.0e-38 161.8 105 68.6
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 3.0e-38 161.8 107 71.0
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 3.9e-38 161.4 97 80.4
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 5.1e-38 161.0 105 71.4
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.1e-38 161.0 105 70.5
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.1e-38 161.0 105 70.5
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.1e-37 159.8 107 73.8
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.1e-37 159.8 107 73.8
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 70.5
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 71.4
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 3.6e-36 154.8 97 73.2
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 2.4e-35 152.1 105 70.5
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 7.6e-34 147.1 92 75.0
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.7e-33 146.0 136 56.6
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.1e-32 143.3 105 64.8
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.4e-32 142.9 109 67.9
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.9e-32 142.5 105 63.8
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 7.1e-32 140.6 102 66.7
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 9.3e-32 140.2 133 51.9
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 6.0e-31 137.5 102 62.7
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.9e-30 134.8 105 60.0
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.1e-29 133.3 94 64.9
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 4.3e-29 131.3 76 82.9
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.1e-28 129.0 104 60.6
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 8.1e-28 127.1 103 58.3
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.8e-27 125.9 93 63.4
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 4.0e-27 124.8 77 75.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 6.9e-27 124.0 78 74.4
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.2e-26 123.2 91 63.7
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.6e-26 122.1 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 2.9e-25 118.6 90 60.0
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 8.4e-25 117.1 70 81.4
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 3.2e-24 115.2 74 71.6
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 4.2e-24 114.8 91 57.1
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 7.1e-24 114.0 70 80.0
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 9.3e-24 113.6 76 69.7
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 9.3e-24 113.6 86 65.1
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 6.0e-23 110.9 97 61.9
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.8e-22 109.4 68 73.5
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 3.0e-22 108.6 92 55.4
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 7.4e-21 104.0 113 53.1
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.1e-20 102.4 105 52.4
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.8e-19 99.4 79 59.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 2.1e-15 85.9 50 82.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.8e-14 82.8 82 57.3
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 2.5e-13 79.0 46 76.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 4.5e-10 68.2 85 38.8
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 5.8e-10 67.8 42 69.0
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 3.8e-09 65.1 49 65.3
unitig_8.g4716 Utricularia gibba HOM05D000027 ORTHO05D002055 5.1e-06 54.7 97 36.1
ClCG10G020180 Citrullus lanatus HOM05D005747 ORTHO05D149649 6.7e-06 54.3 32 71.9


User provided reference genes

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