Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 2.7e-59 231.9 125 100.0
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 2.8e-48 195.3 124 83.9
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 8.2e-48 193.7 124 82.3
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 1.3e-45 186.4 141 74.5
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 1.7e-37 159.5 127 65.4
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.3e-37 159.1 166 57.2
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 2.9e-37 158.7 126 69.0
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 5.0e-37 157.9 125 70.4
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 1.1e-36 156.8 127 70.9
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 1.1e-36 156.8 122 68.0
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 1.5e-36 156.4 123 67.5
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 1.9e-36 156.0 126 67.5
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 2.5e-36 155.6 126 66.7
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 3.3e-36 155.2 126 65.1
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 4.2e-36 154.8 126 63.5
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 1.2e-35 153.3 126 65.1
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 1.2e-35 153.3 129 65.1
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.6e-35 152.9 124 67.7
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 2.1e-35 152.5 130 63.1
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 2.1e-35 152.5 127 63.0
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 2.8e-35 152.1 129 68.2
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 3.6e-35 151.8 126 64.3
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 8.0e-35 150.6 111 73.0
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.8e-34 149.4 124 66.1
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 3.0e-34 148.7 127 63.0
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 5.2e-34 147.9 125 63.2
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 6.8e-34 147.5 124 62.9
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 1.2e-33 146.7 124 64.5
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 2.0e-33 146.0 129 59.7
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 3.4e-33 145.2 146 58.2
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 4.4e-33 144.8 126 61.9
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 7.5e-33 144.1 125 62.4
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 7.5e-33 144.1 124 64.5
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 7.5e-33 144.1 124 62.9
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 1.3e-32 143.3 123 62.6
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.3e-32 143.3 124 62.9
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 2.8e-32 142.1 127 59.1
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 3.7e-32 141.7 125 60.8
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 3.7e-32 141.7 125 61.6
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 4.9e-32 141.4 125 60.8
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 4.9e-32 141.4 125 60.8
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 8.3e-32 140.6 124 59.7
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 1.1e-31 140.2 125 60.0
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 1.1e-31 140.2 127 59.1
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 1.4e-31 139.8 136 57.4
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 1.4e-31 139.8 119 63.9
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.4e-31 139.8 120 61.7
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.4e-31 139.8 124 61.3
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 1.8e-31 139.4 120 61.7
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 1.8e-31 139.4 125 60.0
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 2.4e-31 139.0 127 60.6
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 3.1e-31 138.7 127 58.3
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 4.1e-31 138.3 126 60.3
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 5.4e-31 137.9 140 56.4
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 5.4e-31 137.9 124 60.5
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 7.0e-31 137.5 127 56.7
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 7.0e-31 137.5 124 59.7
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 9.2e-31 137.1 131 59.5
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 9.2e-31 137.1 126 60.3
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 1.2e-30 136.7 124 58.9
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 2.0e-30 136.0 125 61.6
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 3.5e-30 135.2 120 58.3
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 4.5e-30 134.8 123 60.2
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 7.8e-30 134.0 127 57.5
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 1.3e-29 133.3 124 58.9
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 1.3e-29 133.3 118 61.0
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 1.7e-29 132.9 127 56.7
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 2.9e-29 132.1 123 57.7
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 2.9e-29 132.1 159 50.3
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 3.8e-29 131.7 128 56.2
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 5.0e-29 131.3 123 56.9
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 6.6e-29 131.0 122 57.4
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 8.6e-29 130.6 127 57.5
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 8.6e-29 130.6 127 57.5
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 8.6e-29 130.6 123 55.3
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.1e-28 130.2 122 55.7
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 1.1e-28 130.2 128 52.3
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.5e-28 129.8 128 55.5
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 1.5e-28 129.8 124 58.1
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 7.3e-28 127.5 122 55.7
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 7.3e-28 127.5 134 53.7
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 9.5e-28 127.1 124 52.4
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 9.5e-28 127.1 124 52.4
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 1.2e-27 126.7 129 54.3
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 1.6e-27 126.3 123 56.1
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 2.8e-27 125.6 126 57.1
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 3.6e-27 125.2 124 55.6
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 6.1e-27 124.4 125 52.0
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 8.0e-27 124.0 123 53.7
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 8.0e-27 124.0 128 53.9
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 2.3e-26 122.5 127 51.2
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 8.9e-26 120.6 121 53.7
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 8.9e-26 120.6 121 53.7
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 8.9e-26 120.6 121 53.7
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 8.9e-26 120.6 98 65.3
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 1.2e-25 120.2 123 54.5
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 7.5e-25 117.5 88 68.2
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 9.8e-25 117.1 109 57.8
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 4.6e-22 108.2 82 65.9
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 1.7e-21 106.3 103 55.3
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 1.5e-20 103.2 76 63.2
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 5.6e-20 101.3 74 68.9
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.6e-19 99.8 122 47.5
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.6e-19 99.8 122 46.7
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 2.8e-19 99.0 80 62.5
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 7.0e-15 84.3 90 50.0
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 1.6e-14 83.2 112 45.5
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 4.6e-14 81.6 98 43.9
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 1.9e-12 76.3 98 50.0
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 2.5e-12 75.9 112 41.1
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 3.3e-12 75.5 112 40.2
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 1.6e-11 73.2 79 55.7
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 2.3e-10 69.3 94 45.7
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 2.3e-10 69.3 94 45.7
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 2.6e-09 65.9 88 46.6
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 4.4e-09 65.1 88 46.6
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 2.9e-08 62.4 114 40.4
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 2.9e-08 62.4 88 45.5
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 6.4e-08 61.2 47 68.1
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 1.6e-06 56.6 40 67.5
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 2.1e-06 56.2 53 54.7
arahy.Tifrunner.gnm1.ann1.LA4XPU Arachis hypogaea HOM05D006467 ORTHO05D008012 6.0e-06 54.7 33 75.8


User provided reference genes

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