Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G001804 Manihot esculenta HOM05D003394 ORTHO05D004183 8.5e-71 270.4 154 100.0
Gohir.A01G217900 Gossypium hirsutum HOM05D003394 ORTHO05D004183 8.0e-53 210.7 150 78.0
Gorai.002G251700 Gossypium raimondii HOM05D003394 ORTHO05D004183 4.0e-52 208.4 150 78.0
Potri.006G132800 Populus trichocarpa HOM05D003394 ORTHO05D004183 8.9e-52 207.2 150 78.0
Duzib128G1992 Durio zibethinus HOM05D003394 ORTHO05D004183 1.2e-51 206.8 155 78.7
Potri.016G084100 Populus trichocarpa HOM05D003394 ORTHO05D004183 2.9e-50 202.2 155 72.9
QL07p045546 Quercus lobata HOM05D003394 ORTHO05D004183 2.9e-50 202.2 151 72.8
QL08p057203 Quercus lobata HOM05D003394 ORTHO05D004183 3.7e-50 201.8 155 76.1
Cfa017491 Carpinus fangiana HOM05D003394 ORTHO05D004183 4.9e-50 201.4 151 76.2
Actinidia05277 Actinidia chinensis HOM05D003394 ORTHO05D004183 6.4e-50 201.1 159 73.0
Atru.chr8.2540 Acer truncatum HOM05D003394 ORTHO05D004183 1.1e-49 200.3 157 72.6
Thecc.05G052300 Theobroma cacao HOM05D003394 ORTHO05D004183 1.1e-49 200.3 161 74.5
Atru.chr2.559 Acer truncatum HOM05D003394 ORTHO05D004183 1.9e-49 199.5 157 71.3
Sabra06G0104300 Salix brachista HOM05D003394 ORTHO05D004183 1.9e-49 199.5 151 74.8
CiPaw.01G277700 Carya illinoinensis HOM05D003394 ORTHO05D004183 4.1e-49 198.4 153 71.9
COL.COLO4_27101 Corchorus olitorius HOM05D003394 ORTHO05D004183 1.2e-48 196.8 154 77.9
Duzib093G0661 Durio zibethinus HOM05D003394 ORTHO05D004183 1.6e-48 196.4 161 74.5
TAR633G2643 Trochodendron aralioides HOM05D003394 ORTHO05D004183 1.6e-48 196.4 157 73.2
Cpa.g.sc2216.1 Carica papaya HOM05D003394 ORTHO05D004183 4.6e-48 194.9 156 68.6
TPR.G35662 Trifolium pratense HOM05D003394 ORTHO05D004183 6.0e-48 194.5 153 71.2
ATR0594G173 Amborella trichopoda HOM05D003394 ORTHO05D004183 1.0e-47 193.7 151 71.5
Nn2g10616 Nelumbo nucifera HOM05D003394 ORTHO05D004183 1.3e-47 193.4 158 74.7
Dinv31373 Davidia involucrata HOM05D003394 ORTHO05D004183 2.3e-47 192.6 156 72.4
Glyma.03G177100 Glycine max HOM05D003394 ORTHO05D004183 2.3e-47 192.6 152 72.4
Lalb_Chr02g0153591 Lupinus albus HOM05D003394 ORTHO05D004183 2.3e-47 192.6 151 75.5
CSS0037704 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 3.0e-47 192.2 156 69.9
Hma1.2p1_0111F.1_g053750 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 3.9e-47 191.8 164 69.5
Thecc.10G065500 Theobroma cacao HOM05D003394 ORTHO05D004183 6.6e-47 191.0 154 71.4
Eucgr.G02789 Eucalyptus grandis HOM05D003394 ORTHO05D004183 8.6e-47 190.7 155 70.3
CiPaw.02G177300 Carya illinoinensis HOM05D003394 ORTHO05D004183 1.9e-46 189.5 151 70.2
ClCG02G013800 Citrullus lanatus HOM05D003394 ORTHO05D004183 2.5e-46 189.1 154 71.4
CANSAT56G1215 Cannabis sativa HOM05D003394 ORTHO05D004183 3.3e-46 188.7 156 70.5
Cc06_g03410 Coffea canephora HOM05D003394 ORTHO05D004183 5.6e-46 188.0 157 68.2
MD04G1114100 Malus domestica HOM05D003394 ORTHO05D004183 5.6e-46 188.0 153 69.9
vmacro07093 Vaccinium macrocarpon HOM05D003394 ORTHO05D004183 5.6e-46 188.0 154 70.8
CsaV3_5G006370 Cucumis sativus L. HOM05D003394 ORTHO05D004183 7.3e-46 187.6 155 71.6
Lj3C977T6 Lonicera japonica HOM05D003394 ORTHO05D004183 7.3e-46 187.6 151 70.2
Oeu029424.1 Olea europaea HOM05D003394 ORTHO05D004183 7.3e-46 187.6 153 73.2
arahy.Tifrunner.gnm1.ann1.TFIN41 Arachis hypogaea HOM05D003394 ORTHO05D004183 9.5e-46 187.2 154 74.0
arahy.Tifrunner.gnm1.ann1.V9C9EC Arachis hypogaea HOM05D003394 ORTHO05D004183 9.5e-46 187.2 154 74.0
Migut.L01654 Erythranthe guttata HOM05D003394 ORTHO05D004183 9.5e-46 187.2 160 70.6
Oeu018422.1 Olea europaea HOM05D003394 ORTHO05D004183 1.2e-45 186.8 153 73.2
Actinidia38239 Actinidia chinensis HOM05D003394 ORTHO05D004183 2.1e-45 186.0 159 70.4
Ciclev10012046m.g Citrus clementina HOM05D003394 ORTHO05D004183 2.1e-45 186.0 151 75.5
MSTRG.26735 Avicennia marina HOM05D003394 ORTHO05D004183 2.8e-45 185.7 159 71.7
MELO3C011721.2 Cucumis melo HOM05D003394 ORTHO05D004183 6.2e-45 184.5 162 64.8
HanXRQChr08g0219711 Helianthus annuus HOM05D003394 ORTHO05D004183 6.2e-45 184.5 154 68.8
MD01G1113600 Malus domestica HOM05D003394 ORTHO05D004183 6.2e-45 184.5 164 69.5
Phvul.007G162750 Phaseolus vulgaris HOM05D003394 ORTHO05D004183 6.2e-45 184.5 153 72.5
RcHm_v2.0_Chr1g0364371 Rosa chinensis HOM05D003394 ORTHO05D004183 6.2e-45 184.5 156 71.2
Prupe.2G220500 Prunus persica HOM05D003394 ORTHO05D004183 8.1e-45 184.1 157 70.7
VMungo0720G1327 Vigna mungo HOM05D003394 ORTHO05D004183 8.1e-45 184.1 153 71.9
COL.COLO4_23774 Corchorus olitorius HOM05D003394 ORTHO05D004183 1.1e-44 183.7 157 70.1
Gohir.D04G082200 Gossypium hirsutum HOM05D003394 ORTHO05D004183 1.1e-44 183.7 156 73.7
Manes.09G070600 Manihot esculenta HOM05D003394 ORTHO05D004183 1.1e-44 183.7 150 76.0
Gorai.012G092900 Gossypium raimondii HOM05D003394 ORTHO05D004183 1.4e-44 183.3 156 73.1
Ciclev10031903m.g Citrus clementina HOM05D003394 ORTHO05D004183 2.3e-44 182.6 155 67.7
Dinv37240 Davidia involucrata HOM05D003394 ORTHO05D004183 2.3e-44 182.6 159 65.4
MD07G1181600 Malus domestica HOM05D003394 ORTHO05D004183 2.3e-44 182.6 158 70.3
CSS0040010 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 3.1e-44 182.2 159 72.3
ECA233G1391 Erigeron canadensis HOM05D003394 ORTHO05D004183 3.1e-44 182.2 156 71.2
FAN06G2221 Fragaria x ananassa HOM05D003394 ORTHO05D004183 3.1e-44 182.2 156 69.9
Potri.008G045600 Populus trichocarpa HOM05D003394 ORTHO05D004183 3.1e-44 182.2 156 71.8
HanXRQChr12g0370391 Helianthus annuus HOM05D003394 ORTHO05D004183 4.0e-44 181.8 161 69.6
PGR142G1653 Punica granatum HOM05D003394 ORTHO05D004183 5.2e-44 181.4 156 66.7
FvH4_6g15130 Fragaria vesca HOM05D003394 ORTHO05D004183 8.9e-44 180.6 156 66.7
FAN14G5170 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.2e-43 180.3 158 68.4
Duzib114G0225 Durio zibethinus HOM05D003394 ORTHO05D004183 1.5e-43 179.9 157 69.4
FAN03G2813 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.5e-43 179.9 156 69.2
FAN06G0926 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.5e-43 179.9 156 69.2
Lalb_Chr06g0171311 Lupinus albus HOM05D003394 ORTHO05D004183 1.5e-43 179.9 152 71.1
FAN10G3299 Fragaria x ananassa HOM05D003394 ORTHO05D004183 2.0e-43 179.5 153 70.6
Lalb_Chr21g0314591 Lupinus albus HOM05D003394 ORTHO05D004183 2.0e-43 179.5 152 71.1
CDE02G0377 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 3.4e-43 178.7 152 67.8
Prupe.6G243000 Prunus persica HOM05D003394 ORTHO05D004183 3.4e-43 178.7 145 70.3
Gohir.A05G343800 Gossypium hirsutum HOM05D003394 ORTHO05D004183 5.8e-43 177.9 156 71.8
Migut.J00405 Erythranthe guttata HOM05D003394 ORTHO05D004183 9.8e-43 177.2 156 67.9
FAN01G1405 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.3e-42 176.8 157 68.8
RcHm_v2.0_Chr3g0468431 Rosa chinensis HOM05D003394 ORTHO05D004183 1.3e-42 176.8 155 65.8
SalBow3G4124 Salvia bowleyana HOM05D003394 ORTHO05D004183 1.3e-42 176.8 162 61.1
Sed0009252 Sechium edule HOM05D003394 ORTHO05D004183 2.2e-42 176.0 163 67.5
Duzib128G0237 Durio zibethinus HOM05D003394 ORTHO05D004183 2.9e-42 175.6 157 69.4
Atru.chr12.617 Acer truncatum HOM05D003394 ORTHO05D004183 3.7e-42 175.3 156 68.6
Psat0ss6317g0120 Pisum sativum HOM05D003394 ORTHO05D004183 4.9e-42 174.9 153 66.7
Haze_16950 Corylus avellana HOM05D003394 ORTHO05D004183 8.3e-42 174.1 183 62.3
FvH4_7g20460 Fragaria vesca HOM05D003394 ORTHO05D004183 8.3e-42 174.1 157 68.2
HanXRQChr15g0496801 Helianthus annuus HOM05D003394 ORTHO05D004183 8.3e-42 174.1 157 68.8
Medtr1g067020 Medicago truncatula HOM05D003394 ORTHO05D004183 1.9e-41 172.9 156 67.9
PSO384G0969 Papaver somniferum HOM05D003394 ORTHO05D004183 4.1e-41 171.8 152 64.5
CDE09G0715 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 7.1e-41 171.0 148 66.9
Hma1.2p1_0348F.1_g131920 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 9.2e-41 170.6 179 60.9
PSO339G1296 Papaver somniferum HOM05D003394 ORTHO05D004183 1.2e-40 170.2 152 63.8
DCAR_019147 Daucus carota HOM05D003394 ORTHO05D004183 1.6e-40 169.9 157 63.7
FAN09G2519 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.6e-40 169.9 156 64.7
Aqoxy4G03149 Aquilegia oxysepala HOM05D003394 ORTHO05D004183 3.5e-40 168.7 155 67.7
Glyma.10G048400 Glycine max HOM05D003394 ORTHO05D004183 3.5e-40 168.7 154 68.2
Glyma.13G136200 Glycine max HOM05D003394 ORTHO05D004183 4.6e-40 168.3 154 66.9
Lsat_1_v5_gn_9_66560 Lactuca sativa HOM05D003394 ORTHO05D004183 4.6e-40 168.3 149 72.5
Eucgr.A01194 Eucalyptus grandis HOM05D003394 ORTHO05D004183 1.3e-39 166.8 153 62.7
PGR004G2225 Punica granatum HOM05D003394 ORTHO05D004183 1.3e-39 166.8 153 63.4
Nitab4.5_0000848g0130 Nicotiana tabacum HOM05D003394 ORTHO05D004183 1.5e-38 163.3 167 61.1
Haze_20669 Corylus avellana HOM05D003394 ORTHO05D004183 3.3e-38 162.2 102 84.3
Lj5g0004676 Lotus japonicus HOM05D003394 ORTHO05D004183 4.3e-38 161.8 148 69.6
Nitab4.5_0003820g0050 Nicotiana tabacum HOM05D003394 ORTHO05D004183 4.3e-38 161.8 175 57.1
SalBow4G2948 Salvia bowleyana HOM05D003394 ORTHO05D004183 5.6e-38 161.4 165 61.2
Solyc09g007230.3 Solanum lycopersicum HOM05D003394 ORTHO05D004183 7.3e-38 161.0 166 60.8
Sopen09g002100 Solanum pennellii HOM05D003394 ORTHO05D004183 7.3e-38 161.0 166 61.4
Hund20140 Selenicereus undatus HOM05D003394 ORTHO05D004183 9.5e-38 160.6 163 63.2
Os01g0834700 Oryza sativa ssp. japonica HOM05D003394 ORTHO05D004183 1.2e-37 160.2 155 64.5
Sabra08G0031900 Salix brachista HOM05D003394 ORTHO05D004183 2.8e-37 159.1 99 83.8
TAR636G1733 Trochodendron aralioides HOM05D003394 ORTHO05D004183 2.8e-37 159.1 159 63.5
BcaNung04098 Brassica carinata HOM05D003394 ORTHO05D004183 3.6e-37 158.7 158 63.9
C09p15140 Brassica napus HOM05D003394 ORTHO05D004183 3.6e-37 158.7 158 63.9
BolC9t54420H Brassica oleracea HOM05D003394 ORTHO05D004183 3.6e-37 158.7 158 63.9
BraA09t36921Z Brassica rapa HOM05D003394 ORTHO05D004183 6.2e-37 157.9 158 63.9
MBI14_g24892_MAGBIO Magnolia biondii HOM05D003394 ORTHO05D004183 6.2e-37 157.9 99 84.8
THA.LOC104799363 Tarenaya hassleriana HOM05D003394 ORTHO05D004183 8.1e-37 157.5 157 64.3
HPP92_001029 Vanilla planifolia HOM05D003394 ORTHO05D004183 8.1e-37 157.5 148 64.9
AUR62040529 Chenopodium quinoa HOM05D003394 ORTHO05D004183 1.4e-36 156.8 165 57.0
Sp3g33510 Schrenkiella parvula HOM05D003394 ORTHO05D004183 1.8e-36 156.4 156 63.5
Rhsim03G0141300 Rhododendron simsii HOM05D003394 ORTHO05D004183 4.0e-36 155.2 99 83.8
ECA232G1617 Erigeron canadensis HOM05D003394 ORTHO05D004183 5.2e-36 154.8 142 73.2
TWI15G1024 Tripterygium wilfordii HOM05D003394 ORTHO05D004183 5.2e-36 154.8 168 61.9
Lsat_1_v5_gn_8_20961 Lactuca sativa HOM05D003394 ORTHO05D004183 6.8e-36 154.5 162 61.7
Zm00001eb148820 Zea mays HOM05D003394 ORTHO05D004183 6.8e-36 154.5 155 64.5
CAN.G350.44 Capsicum annuum HOM05D003394 ORTHO05D004183 1.2e-35 153.7 164 59.1
DCAR_009274 Daucus carota HOM05D003394 ORTHO05D004183 2.0e-35 152.9 99 80.8
BcaC06g36708 Brassica carinata HOM05D003394 ORTHO05D004183 4.4e-35 151.8 156 62.8
BolC7t40525H Brassica oleracea HOM05D003394 ORTHO05D004183 4.4e-35 151.8 156 62.8
SGA_v2.0_scaffold35G14175 Striga asiatica HOM05D003394 ORTHO05D004183 4.4e-35 151.8 106 78.3
Thhalv10002021m.g Eutrema salsugineum HOM05D003394 ORTHO05D004183 2.2e-34 149.4 159 61.6
A09p58950 Brassica napus HOM05D003394 ORTHO05D004183 2.9e-34 149.1 154 63.0
BraA09t41282Z Brassica rapa HOM05D003394 ORTHO05D004183 2.9e-34 149.1 154 63.0
C07p00860 Brassica napus HOM05D003394 ORTHO05D004183 4.9e-34 148.3 157 61.8
BcaB08g34902 Brassica carinata HOM05D003394 ORTHO05D004183 1.1e-33 147.1 159 61.0
BcaC07g41222 Brassica carinata HOM05D003394 ORTHO05D004183 1.4e-33 146.7 155 61.9
Ca_02310_v3 Cicer arietinum L. HOM05D003394 ORTHO05D004183 1.4e-33 146.7 98 79.6
BraA07t27835Z Brassica rapa HOM05D003394 ORTHO05D004183 3.2e-33 145.6 101 74.3
A09p12770 Brassica napus HOM05D003394 ORTHO05D004183 5.4e-33 144.8 158 60.8
Pp3c25_2690 Physcomitrium patens HOM05D003394 ORTHO05D004183 7.1e-33 144.4 148 53.4
A07p00440 Brassica napus HOM05D003394 ORTHO05D004183 1.2e-32 143.7 158 60.1
FAN10G3966 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.6e-32 143.3 92 80.4
Ah.08g211990 Amaranthus hybridus HOM05D003394 ORTHO05D004183 2.7e-32 142.5 163 57.1
BcaB03g16817 Brassica carinata HOM05D003394 ORTHO05D004183 2.7e-32 142.5 155 60.0
Mapoly0100s0024 Marchantia polymorpha HOM05D003394 ORTHO05D004183 4.6e-32 141.7 158 53.2
Lj8A94G44 Lonicera japonica HOM05D003394 ORTHO05D004183 1.0e-31 140.6 108 69.4
EL10Ac7g17330 Beta vulgaris HOM05D003394 ORTHO05D004183 2.3e-31 139.4 162 55.6
Peaxi162Scf00005g05117 Petunia axillaris HOM05D003394 ORTHO05D004183 5.1e-31 138.3 96 74.0
SEGI_02269 Sequoiadendron giganteum HOM05D003394 ORTHO05D004183 1.1e-30 137.1 152 55.3
PGSC0003DMG400027902 Solanum tuberosum HOM05D003394 ORTHO05D004183 1.9e-30 136.3 120 62.5
AUR62042915 Chenopodium quinoa HOM05D003394 ORTHO05D004183 2.5e-30 136.0 164 54.3
Sc01g0003650 Simmondsia chinensis HOM05D003394 ORTHO05D004183 2.5e-30 136.0 98 72.4
SMO358G0089 Selaginella moellendorffii HOM05D003394 ORTHO05D004183 4.3e-30 135.2 148 53.4
Nitab4.5_0006316g0020 Nicotiana tabacum HOM05D003394 ORTHO05D004183 7.3e-30 134.4 96 70.8
Pp3c6_18260 Physcomitrium patens HOM05D003394 ORTHO05D004183 9.6e-30 134.0 149 53.7
Aa31LG8G17270 Aethionema arabicum HOM05D003394 ORTHO05D004183 1.6e-29 133.3 167 55.7
Carub.0003s3461 Capsella rubella HOM05D003394 ORTHO05D004183 2.8e-29 132.5 159 58.5
AT2G20280 Arabidopsis thaliana HOM05D003394 ORTHO05D004183 3.6e-29 132.1 160 58.1
CARHR110770 Cardamine hirsuta HOM05D003394 ORTHO05D004183 3.6e-29 132.1 160 58.1
AL3G47810 Arabidopsis lyrata HOM05D003394 ORTHO05D004183 4.7e-29 131.7 161 57.8
CBR_g30214 Chara braunii HOM05D003394 ORTHO05D004183 5.2e-28 128.3 155 48.4
Gohir.D01G206800 Gossypium hirsutum HOM05D003394 ORTHO05D004183 6.8e-28 127.9 99 70.7
SGA_v2.0_scaffold94G28659 Striga asiatica HOM05D003394 ORTHO05D004183 2.6e-27 125.9 158 54.4
Atru.chr8.2539 Acer truncatum HOM05D003394 ORTHO05D004183 4.9e-26 121.7 69 92.8
GSVIVG01016357001 Vitis vinifera HOM05D003394 ORTHO05D004183 2.1e-24 116.3 170 48.8
MD12G1126300 Malus domestica HOM05D003394 ORTHO05D004183 3.5e-24 115.5 125 57.6
Nitab4.5_0016592g0010 Nicotiana tabacum HOM05D003394 ORTHO05D286500 1.5e-22 110.2 118 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1346 Anthoceros agrestis HOM05D003394 ORTHO05D004183 1.3e-21 107.1 117 48.7
Glyma.19G177833 Glycine max HOM05D003394 ORTHO05D004183 4.8e-21 105.1 64 87.5
Haze_20530 Corylus avellana HOM05D003394 ORTHO05D004183 2.0e-19 99.8 98 59.2
TAR636G1965 Trochodendron aralioides HOM05D003394 ORTHO05D004183 2.0e-19 99.8 81 65.4
C08p42270 Brassica napus HOM05D003394 ORTHO05D004183 7.6e-19 97.8 115 50.4
BolC8t51787H Brassica oleracea HOM05D003394 ORTHO05D004183 7.6e-19 97.8 115 50.4
TAR636G0680 Trochodendron aralioides HOM05D003394 ORTHO05D004183 1.3e-18 97.1 87 60.9
unitig_8.g4664 Utricularia gibba HOM05D003394 ORTHO05D004183 9.6e-14 80.9 160 45.0
AagrBONN_evm.TU.Sc2ySwM_344.1347 Anthoceros agrestis HOM05D003394 ORTHO05D004183 3.8e-10 68.9 117 38.5
MD12G1126400 Malus domestica HOM05D003394 ORTHO05D004183 3.8e-10 68.9 38 92.1
A09p58970 Brassica napus HOM05D003394 ORTHO05D027701 1.2e-08 63.9 117 41.9
BraA09t41283Z Brassica rapa HOM05D003394 ORTHO05D027701 1.2e-08 63.9 117 41.9
Cre01.g014050 Chlamydomonas reinhardtii HOM05D003394 ORTHO05D004183 2.1e-08 63.2 135 35.6
CiPaw.09G181800 Carya illinoinensis HOM05D003394 ORTHO05D004183 3.9e-07 58.9 53 64.2
Medtr6g078970 Medicago truncatula HOM05D003394 ORTHO05D267248 7.4e-06 54.7 73 45.2


User provided reference genes

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