Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 6.5e-135 484.2 267 100.0
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 4.3e-62 242.3 256 64.5
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 4.8e-61 238.8 287 57.8
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.1e-60 236.1 286 56.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 4.5e-51 205.7 285 50.9
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.6e-45 187.2 273 48.0
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.4e-44 184.1 243 56.8
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.5e-42 175.3 269 47.2
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 9.4e-41 171.4 273 46.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.4e-39 167.5 268 47.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 6.7e-39 165.2 270 44.8
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.7e-37 160.6 251 46.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 2.2e-37 160.2 256 43.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-36 157.9 259 45.6
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.4e-36 157.5 256 46.9
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.1e-36 156.0 326 40.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.9e-35 152.1 299 40.5
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.9e-34 149.8 256 46.1
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.5e-33 146.7 253 43.9
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.2e-33 145.2 282 42.9
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 9.4e-33 144.8 252 44.0
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.7e-32 143.3 252 42.9
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.6e-32 142.9 280 41.4
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.0e-31 141.4 280 42.5
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.4e-31 141.0 278 41.7
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.7e-31 138.7 258 42.6
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.5e-30 137.5 257 44.4
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 3.3e-30 136.3 252 42.9
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 5.7e-30 135.6 247 44.5
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 7.4e-30 135.2 286 40.2
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 9.7e-30 134.8 301 38.9
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.3e-29 134.4 282 40.4
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.2e-29 133.7 270 43.7
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.8e-29 132.5 262 44.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.1e-28 131.3 256 41.0
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.8e-28 130.6 256 43.4
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 4.1e-28 129.4 269 40.5
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 2.0e-27 127.1 266 39.8
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.6e-27 126.7 299 35.5
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.5e-27 126.3 255 40.8
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.5e-27 125.9 256 39.8
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.0e-26 124.8 276 39.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 2.2e-26 123.6 271 40.2
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.8e-26 122.9 251 39.4
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 7.2e-25 118.6 277 38.6
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 9.4e-25 118.2 274 36.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.7e-24 116.7 150 54.7
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.7e-24 116.7 292 38.7
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 6.1e-24 115.5 271 37.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.1e-24 115.5 244 39.8
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.8e-23 114.0 248 38.3
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.8e-23 114.0 251 38.6
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 4.0e-23 112.8 277 39.0
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.7e-22 109.0 274 33.6
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 9.7e-22 108.2 329 31.3
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.8e-21 105.9 113 60.2
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.1e-20 104.8 271 36.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.4e-20 104.4 310 33.5
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.8e-20 104.0 241 37.3
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 3.1e-20 103.2 98 68.4
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 7.0e-20 102.1 256 35.2
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.7e-19 100.1 218 40.8
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 2.7e-19 100.1 276 34.4
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 2.7e-19 100.1 258 36.4
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.5e-19 99.8 273 35.9
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 3.5e-19 99.8 168 46.4
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.0e-18 98.2 160 46.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.0e-18 98.2 143 49.0
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.3e-18 97.8 176 44.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.7e-18 97.4 265 35.1
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.9e-18 96.7 160 45.6
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 3.8e-18 96.3 118 53.4
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 5.0e-18 95.9 168 47.0
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 8.5e-18 95.1 150 46.7
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.5e-17 94.4 279 33.3
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.5e-17 93.6 207 41.5
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 3.2e-17 93.2 262 33.2
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 3.2e-17 93.2 262 32.8
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 3.2e-17 93.2 272 36.0
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 4.2e-17 92.8 109 56.9
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 5.5e-17 92.4 260 34.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 5.5e-17 92.4 276 31.9
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 9.4e-17 91.7 149 49.0
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 9.4e-17 91.7 255 35.7
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 9.4e-17 91.7 155 47.7
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 1.6e-16 90.9 127 50.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.1e-16 90.5 260 33.8
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 3.6e-16 89.7 265 35.8
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 4.7e-16 89.4 268 33.6
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 4.7e-16 89.4 167 45.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 8.0e-16 88.6 272 31.6
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.0e-15 88.2 231 36.8
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.4e-15 87.8 128 49.2
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-15 87.4 171 46.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.8e-15 87.4 171 46.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 2.3e-15 87.0 104 58.7
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.0e-15 86.3 166 45.8
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 5.2e-15 85.9 264 32.6
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 6.8e-15 85.5 296 32.8
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.5e-14 84.3 262 33.2
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 2.0e-14 84.0 79 64.6
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 5.7e-14 82.4 312 30.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 9.8e-14 81.6 211 40.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 9.8e-14 81.6 271 32.1
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.3e-13 81.3 165 42.4
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.7e-13 80.9 198 38.9
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.7e-13 80.9 208 37.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.7e-13 80.9 147 44.9
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 2.2e-13 80.5 73 63.0
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.2e-13 80.5 73 63.0
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.2e-13 80.5 262 33.6
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.2e-13 80.5 224 37.5
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.2e-13 80.5 323 29.4
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 2.2e-13 80.5 91 56.0
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.7e-13 79.7 167 43.1
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 4.8e-13 79.3 262 31.3
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 6.3e-13 79.0 141 43.3
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 8.3e-13 78.6 80 58.8
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.8e-12 77.4 70 65.7
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 1.8e-12 77.4 220 33.6
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 5.4e-12 75.9 152 42.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 9.1e-12 75.1 144 42.4
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-11 74.7 66 66.7
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.6e-11 74.3 248 35.1
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 2.0e-11 73.9 66 65.2
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.9e-10 70.1 69 59.4
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.9e-10 70.1 177 41.2
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 2.9e-10 70.1 237 34.2
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 6.5e-10 68.9 69 58.0
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.5e-09 67.8 73 57.5
Ca_11442_v3 Cicer arietinum L. HOM05D004973 ORTHO05D006119 2.5e-09 67.0 254 29.9
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 3.2e-09 66.6 255 31.8
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 4.2e-09 66.2 214 32.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 3.6e-08 63.2 233 33.0
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 4.7e-08 62.8 196 33.7
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.3e-07 60.5 40 75.0
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 3.0e-07 60.1 233 34.3
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 1.5e-06 57.8 244 30.7


User provided reference genes

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