Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 1.3e-135 486.5 265 100.0
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 3.6e-125 451.8 265 91.7
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 3.6e-125 451.8 265 90.9
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 6.1e-125 451.1 265 90.9
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 1.0e-124 450.3 265 90.6
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 5.1e-124 448.0 265 91.3
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 2.0e-123 446.0 265 89.1
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 7.4e-123 444.1 265 89.4
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 7.4e-123 444.1 262 90.8
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 2.2e-122 442.6 265 89.1
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 4.8e-122 441.4 265 88.3
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 4.8e-122 441.4 262 88.9
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 8.2e-122 440.7 265 87.2
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 2.4e-121 439.1 265 87.2
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 9.1e-121 437.2 261 88.1
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 1.2e-120 436.8 265 87.2
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 1.2e-120 436.8 265 89.1
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 1.5e-120 436.4 265 87.9
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 5.9e-120 434.5 265 86.4
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.3e-119 433.3 265 86.0
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.7e-119 433.0 265 86.0
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 2.2e-119 432.6 265 86.8
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 2.2e-119 432.6 264 86.4
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.9e-119 432.2 265 84.2
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.9e-119 432.2 265 83.8
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 5.0e-119 431.4 265 86.0
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 5.0e-119 431.4 265 84.9
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 6.5e-119 431.0 265 83.8
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 6.5e-119 431.0 265 86.4
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 1.1e-118 430.3 278 84.9
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 1.1e-118 430.3 265 86.4
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.1e-118 430.3 265 85.3
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 1.9e-118 429.5 263 87.1
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.2e-118 428.7 265 83.0
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 4.2e-118 428.3 265 85.3
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 4.2e-118 428.3 265 87.9
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 7.2e-118 427.6 264 84.5
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 2.1e-117 426.0 262 84.4
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 2.1e-117 426.0 265 85.3
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 8.0e-117 424.1 265 83.0
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 1.0e-116 423.7 264 83.3
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 1.8e-116 422.9 263 85.6
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.8e-116 422.9 267 84.6
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 3.9e-116 421.8 265 85.3
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 6.7e-116 421.0 265 82.3
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 1.1e-115 420.2 262 87.8
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 2.0e-115 419.5 263 84.0
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 2.6e-115 419.1 260 83.1
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 2.6e-115 419.1 260 83.1
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 2.6e-115 419.1 255 85.1
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 3.3e-115 418.7 265 84.5
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 3.3e-115 418.7 264 82.2
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 3.3e-115 418.7 260 83.1
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 3.3e-115 418.7 262 82.4
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 3.3e-115 418.7 265 83.4
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 4.4e-115 418.3 264 81.8
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 4.4e-115 418.3 262 84.0
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 4.4e-115 418.3 263 84.4
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 5.7e-115 417.9 259 86.1
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 9.7e-115 417.2 263 83.7
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 1.3e-114 416.8 263 84.0
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 1.3e-114 416.8 265 83.8
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 1.7e-114 416.4 262 84.4
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 2.2e-114 416.0 260 82.7
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 2.2e-114 416.0 260 82.7
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 3.7e-114 415.2 262 82.4
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 3.7e-114 415.2 265 81.1
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 3.7e-114 415.2 253 87.7
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 8.2e-114 414.1 262 84.4
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 1.1e-113 413.7 265 83.0
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 1.1e-113 413.7 263 84.0
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 1.4e-113 413.3 262 84.0
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 1.4e-113 413.3 262 83.2
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 2.4e-113 412.5 262 81.7
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 2.4e-113 412.5 263 84.0
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 3.1e-113 412.1 262 81.3
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 3.1e-113 412.1 265 81.1
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 4.1e-113 411.8 263 82.9
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 4.1e-113 411.8 263 82.9
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 4.1e-113 411.8 263 82.9
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 1.2e-112 410.2 260 81.5
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 1.2e-112 410.2 260 81.5
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 2.0e-112 409.5 260 82.7
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 4.5e-112 408.3 265 82.3
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 5.9e-112 407.9 287 79.4
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.7e-111 406.4 265 80.0
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 2.2e-111 406.0 286 80.1
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 2.9e-111 405.6 256 86.7
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 8.5e-111 404.1 241 89.2
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 1.9e-110 402.9 259 83.0
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 2.5e-110 402.5 262 80.9
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 5.5e-110 401.4 261 80.8
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 7.2e-110 401.0 262 79.4
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 7.2e-110 401.0 261 82.0
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 2.7e-109 399.1 253 84.2
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 2.7e-109 399.1 259 82.2
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.0e-108 397.1 253 82.2
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 1.2e-107 393.7 251 82.5
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 5.7e-107 391.3 225 92.0
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.7e-106 389.8 264 75.8
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 1.4e-105 386.7 259 77.6
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 3.1e-105 385.6 258 79.5
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 1.6e-104 383.3 238 85.7
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 7.7e-104 380.9 225 89.8
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 2.2e-103 379.4 257 77.4
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 2.5e-102 375.9 265 77.0
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 2.6e-99 365.9 262 72.9
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 3.4e-99 365.5 265 76.6
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 6.3e-98 361.3 258 73.6
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.4e-97 358.2 262 71.8
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 2.5e-94 349.4 256 69.9
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 1.2e-93 347.1 265 74.3
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.0e-92 344.0 257 70.0
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 2.4e-89 332.8 258 67.8
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 6.6e-87 324.7 187 92.0
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 8.9e-84 314.3 252 67.5
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-69 265.4 255 54.9
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 4.4e-67 258.8 179 75.4
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 4.9e-66 255.4 265 58.9
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.4e-65 253.1 161 85.1
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 1.2e-64 250.8 152 87.5
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 8.9e-60 234.6 154 82.5
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.4e-52 209.9 265 51.3
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 4.4e-51 205.7 249 44.6
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 1.3e-47 194.1 250 42.4
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 6.4e-42 175.3 240 43.3
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.2e-35 154.5 98 77.6
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 8.4e-34 148.3 96 82.3
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 3.2e-33 146.4 240 36.7
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 6.0e-32 142.1 77 96.1
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 2.1e-29 133.7 75 92.0
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 1.8e-28 130.6 119 59.7
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 3.8e-26 122.9 241 36.1
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 3.0e-23 113.2 100 64.0
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 1.2e-11 74.7 75 61.3
Actinidia13116 Actinidia chinensis HOM05D000001 ORTHO05D009676 3.3e-06 56.6 47 59.6


User provided reference genes

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