Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.0e-128 461.5 233 100.0
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.0e-124 449.1 233 97.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.4e-87 325.5 236 68.6
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.4e-56 223.0 237 53.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.9e-51 205.7 244 48.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 3.3e-50 202.6 242 49.6
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 3.3e-50 202.6 242 49.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.8e-49 198.7 239 47.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.2e-47 194.1 218 48.6
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.2e-47 194.1 234 48.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 3.4e-47 192.6 236 47.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.8e-47 191.8 162 60.5
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 7.6e-47 191.4 180 56.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 7.6e-47 191.4 213 50.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 7.6e-47 191.4 173 55.5
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.3e-46 190.7 161 61.5
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 8.4e-46 188.0 176 54.5
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.1e-45 187.6 178 57.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.4e-45 187.2 157 58.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 4.2e-45 185.7 240 48.8
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.2e-44 184.1 235 49.4
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.2e-44 184.1 155 60.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.1e-44 183.3 161 62.7
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.7e-44 183.0 246 45.5
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.7e-44 183.0 245 46.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.3e-43 180.6 151 58.9
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-43 179.9 249 43.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 3.0e-43 179.5 157 58.6
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 3.9e-43 179.1 166 57.2
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 6.7e-43 178.3 163 58.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.1e-42 177.6 236 43.6
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.5e-42 177.2 212 48.6
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 3.3e-42 176.0 168 53.0
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.7e-42 175.3 158 57.6
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 9.7e-42 174.5 221 47.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.7e-42 174.5 221 47.5
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.3e-41 174.1 247 43.7
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.2e-41 173.3 257 42.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 4.8e-41 172.2 190 48.4
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 8.2e-41 171.4 150 55.3
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-40 170.2 187 48.1
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-40 170.2 187 48.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.8e-40 170.2 165 52.7
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.1e-40 169.5 234 45.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.1e-40 169.5 161 52.8
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 4.1e-40 169.1 163 52.8
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 4.1e-40 169.1 163 52.8
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 4.1e-40 169.1 183 51.9
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.1e-40 169.1 222 46.4
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.3e-40 168.7 161 55.3
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-39 167.5 158 53.8
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.2e-39 167.5 227 44.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-39 166.8 163 52.1
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 2.0e-39 166.8 163 52.1
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.4e-39 166.0 150 55.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.4e-39 166.0 150 55.3
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 3.4e-39 166.0 148 61.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-39 165.6 152 57.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-39 165.6 152 57.2
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 4.5e-39 165.6 195 46.2
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 7.6e-39 164.9 237 39.7
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.0e-38 164.5 152 57.2
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.0e-38 164.5 210 43.8
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.7e-38 163.7 244 41.0
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.7e-38 163.7 151 56.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.7e-38 163.7 232 43.1
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.9e-38 162.9 180 50.6
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.8e-38 162.5 232 42.2
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.0e-38 162.2 159 53.5
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 6.5e-38 161.8 217 44.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 8.5e-38 161.4 186 47.8
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.1e-37 161.0 212 44.3
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.4e-37 160.6 154 53.2
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.5e-37 158.7 163 49.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 9.3e-37 157.9 197 46.2
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.2e-36 157.5 165 50.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.6e-36 157.1 167 51.5
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.7e-36 156.4 199 46.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.7e-36 156.4 199 46.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.6e-36 155.6 161 49.7
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 6.1e-36 155.2 199 45.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 6.1e-36 155.2 230 41.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 7.9e-36 154.8 227 41.9
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.0e-35 154.5 174 47.7
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-35 154.1 200 46.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.3e-35 153.3 150 54.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.3e-35 153.3 161 48.4
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 2.3e-35 153.3 156 51.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.0e-35 152.9 162 50.0
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 3.9e-35 152.5 199 44.7
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.9e-35 152.5 155 51.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.1e-35 152.1 152 51.3
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 6.7e-35 151.8 199 44.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 6.7e-35 151.8 182 47.3
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 8.7e-35 151.4 209 41.6
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.1e-34 151.0 156 51.3
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.5e-34 150.6 155 52.3
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.5e-34 150.6 151 50.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.9e-34 150.2 151 51.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 9.7e-34 147.9 166 48.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.3e-33 147.5 203 39.4
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.7e-33 146.0 169 47.3
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.2e-33 144.8 162 48.8
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.8e-32 143.7 167 47.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 3.1e-32 142.9 165 44.8
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.1e-32 142.9 207 43.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.3e-32 142.1 169 46.7
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 6.9e-32 141.7 161 47.2
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.0e-31 140.2 169 45.6
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.0e-31 140.2 156 52.6
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.0e-31 140.2 232 37.1
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.4e-31 139.4 164 45.1
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-30 136.7 155 51.6
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 5.5e-29 132.1 162 44.4
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 6.1e-28 128.6 210 43.8
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 7.9e-28 128.3 154 46.8
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.9e-28 128.3 156 41.7
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 7.9e-28 128.3 158 42.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-27 127.9 121 52.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.4e-27 127.5 172 39.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-27 126.7 135 48.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.1e-27 125.6 137 48.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.7e-27 125.2 135 48.9
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 6.7e-27 125.2 161 47.8
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.5e-26 124.0 155 45.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 9.7e-26 121.3 182 39.6
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.7e-25 120.6 186 39.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.7e-25 120.6 172 42.4
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.8e-25 119.8 170 42.4
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.4e-24 117.5 180 42.2
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.4e-24 117.5 176 40.9
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-24 116.7 175 42.3
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.1e-24 116.3 178 42.1
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 6.9e-24 115.2 180 42.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-23 114.0 189 38.6
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 2.0e-23 113.6 150 41.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.4e-23 112.8 178 46.6
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 4.5e-23 112.5 166 40.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.5e-23 112.5 209 34.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.5e-23 112.5 209 34.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-22 110.9 189 38.6
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.2e-22 110.2 122 50.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.1e-21 107.8 161 37.3
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.5e-21 106.7 186 36.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 7.2e-21 105.1 183 33.3
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.7e-20 102.4 170 35.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.0e-19 101.3 154 36.4
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-17 94.4 105 48.6
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.3e-17 94.4 66 65.2
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.8e-17 92.4 189 34.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.1e-16 89.7 170 34.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.1e-16 88.2 150 33.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.0e-15 87.0 172 32.6
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.6e-15 86.7 153 38.6
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.5e-15 85.9 172 32.0
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.5e-13 80.1 231 29.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.1e-12 75.5 166 30.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.0e-11 74.7 102 38.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.8e-11 73.9 75 58.7
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.0e-11 72.8 164 32.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.6e-10 70.1 83 47.0
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 9.7e-10 68.2 150 32.7
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.8e-08 63.9 73 45.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.1e-08 63.2 94 39.4
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 9.1e-08 61.6 88 37.5


User provided reference genes

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