Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-127 459.9 233 100.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.5e-124 448.4 233 97.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.4e-85 320.1 236 67.8
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 6.9e-56 221.5 238 52.9
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.1e-50 204.1 244 48.0
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.6e-49 200.3 242 49.6
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.6e-49 200.3 242 49.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-48 197.6 242 51.2
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.2e-47 194.1 228 48.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.5e-47 193.7 235 49.4
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.6e-47 191.4 239 49.8
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.2e-46 189.9 213 51.2
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.9e-46 189.5 162 60.5
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.9e-46 189.5 236 46.6
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 3.8e-46 189.1 180 56.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.8e-46 189.1 245 44.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 4.2e-45 185.7 178 57.3
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-44 184.1 176 54.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.6e-44 183.7 233 50.6
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.1e-44 183.3 235 45.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 6.0e-44 181.8 155 60.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 7.9e-44 181.4 240 48.3
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 7.9e-44 181.4 245 46.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 3.9e-43 179.1 241 46.9
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.1e-43 178.7 235 48.9
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.5e-42 177.2 151 58.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.5e-42 176.4 242 43.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 4.3e-42 175.6 157 58.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 5.7e-42 175.3 166 56.6
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.7e-42 174.5 163 57.7
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.3e-41 174.1 237 43.5
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.6e-41 173.7 221 47.1
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.6e-41 173.7 221 47.1
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.2e-41 173.3 193 50.3
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 4.8e-41 172.2 168 52.4
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 8.2e-41 171.4 158 57.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.1e-40 171.0 190 48.4
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.4e-40 170.6 256 43.0
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.3e-40 168.7 222 46.4
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 6.9e-40 168.3 248 42.7
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.2e-39 167.5 150 54.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.2e-39 167.5 223 47.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.5e-39 167.2 234 44.9
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.5e-39 167.2 184 52.2
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-39 166.4 163 52.1
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.6e-39 166.4 163 52.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.6e-39 166.4 165 52.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.5e-39 165.6 215 44.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.5e-39 165.6 215 44.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-39 165.6 152 57.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-39 165.6 152 57.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.5e-39 165.6 161 52.2
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 7.6e-39 164.9 187 47.6
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 7.6e-39 164.9 187 47.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.0e-38 164.5 152 57.9
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.0e-38 164.5 161 54.7
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.2e-38 163.3 233 43.3
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 2.2e-38 163.3 148 61.5
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.2e-38 163.3 158 53.2
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.0e-38 162.2 150 54.7
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.0e-38 162.2 150 54.7
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.0e-38 162.2 232 42.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.0e-38 162.2 240 43.8
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 6.5e-38 161.8 237 39.2
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.9e-37 160.2 195 45.6
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 3.2e-37 159.5 227 44.1
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.2e-37 159.5 214 45.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.2e-37 159.1 159 52.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.2e-37 159.1 214 46.7
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 4.2e-37 159.1 210 43.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 9.3e-37 157.9 244 40.6
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.6e-36 156.0 195 46.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.6e-36 156.0 212 43.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.9e-36 154.8 200 44.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 7.9e-36 154.8 211 43.1
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.3e-35 154.1 167 50.9
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.8e-35 153.7 174 48.3
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-35 153.7 165 49.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 3.0e-35 152.9 224 41.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 6.7e-35 151.8 156 51.3
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 6.7e-35 151.8 163 50.3
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.1e-34 151.0 247 38.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.5e-34 150.6 162 50.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.5e-34 150.6 227 41.9
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-34 149.8 199 45.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-34 149.8 199 45.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.5e-34 149.8 183 47.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.3e-34 149.1 150 53.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 4.3e-34 149.1 157 51.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.7e-34 148.7 213 43.7
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 5.7e-34 148.7 199 44.7
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.7e-34 147.9 199 44.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.7e-34 147.9 155 51.0
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.7e-33 147.1 155 51.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.7e-33 147.1 200 45.0
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.2e-33 146.7 151 51.0
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.2e-33 146.7 151 49.7
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.8e-33 146.4 199 43.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.7e-33 146.0 168 47.0
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 4.8e-33 145.6 166 48.2
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 4.8e-33 145.6 209 41.1
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.4e-32 143.3 167 47.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 3.1e-32 142.9 229 37.6
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 4.1e-32 142.5 162 48.1
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.9e-32 141.7 169 46.7
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.5e-31 140.6 180 49.4
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 4.5e-31 139.0 160 45.0
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-30 137.9 169 46.2
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.3e-30 137.5 232 38.8
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.2e-30 136.7 186 43.5
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.9e-30 136.3 156 51.9
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.8e-30 136.0 169 45.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 4.2e-29 132.5 155 51.0
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.5e-29 132.1 208 42.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.6e-28 129.4 158 42.4
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.1e-28 128.6 162 44.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.3e-27 126.7 156 41.7
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.0e-27 126.3 172 39.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-26 124.0 121 52.1
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.5e-26 124.0 154 46.1
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.3e-26 122.9 135 48.1
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.7e-26 122.1 137 48.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.7e-26 121.3 135 48.1
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 9.7e-26 121.3 161 47.2
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.2e-25 120.2 155 45.2
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 8.2e-25 118.2 182 39.6
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.4e-24 117.5 172 42.4
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.4e-24 116.7 186 39.2
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.4e-24 116.7 170 42.4
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-23 114.0 178 42.1
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-23 114.0 175 42.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.0e-23 113.6 180 41.7
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.0e-23 113.6 176 40.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.4e-23 112.8 150 42.0
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 4.5e-23 112.5 180 41.1
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-22 110.9 196 36.2
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-22 110.9 196 36.2
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.9e-22 109.8 166 40.4
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.9e-22 109.8 178 46.6
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 5.0e-22 109.0 189 37.6
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.4e-21 107.5 123 50.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-21 107.1 189 38.1
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.9e-21 107.1 152 40.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.2e-21 106.3 161 37.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.1e-20 103.6 183 33.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.7e-20 102.4 154 39.0
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.0e-19 99.8 170 35.9
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.4e-18 95.9 189 35.4
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.3e-17 94.4 66 65.2
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.1e-16 91.3 150 34.0
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.4e-16 90.1 105 47.6
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 5.3e-16 89.0 174 35.1
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.0e-14 84.7 172 32.6
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.2e-14 83.6 153 37.9
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.9e-14 83.2 172 32.0
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.6e-12 77.4 231 28.6
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.7e-12 75.9 105 37.1
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.8e-11 73.9 166 30.7
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.6e-10 70.1 75 57.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.6e-10 70.1 164 31.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 4.4e-10 69.3 83 48.2
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.8e-09 66.6 150 32.7
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 8.2e-09 65.1 94 43.6
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.6e-07 60.8 88 37.5
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.7e-07 60.1 73 43.8


User provided reference genes

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