Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G138900 Manihot esculenta HOM05D009452 ORTHO05D010466 3.0e-84 315.5 200 100.0
Prupe.2G260200 Prunus persica HOM05D015621 ORTHO05D015549 1.4e-25 120.6 206 52.4
Potri.019G055900 Populus trichocarpa HOM05D009452 ORTHO05D010466 5.4e-25 118.6 118 62.7
Manes.10G006100 Manihot esculenta HOM05D009452 ORTHO05D010466 1.0e-23 114.4 169 49.1
Haze_17329 Corylus avellana HOM05D009452 ORTHO05D010466 1.7e-23 113.6 211 42.7
TWI53G1543 Tripterygium wilfordii HOM05D009452 ORTHO05D010466 3.0e-23 112.8 129 53.5
Duzib128G1431 Durio zibethinus HOM05D009452 ORTHO05D010466 9.5e-22 107.8 108 55.6
Cfa001234 Carpinus fangiana HOM05D009452 ORTHO05D010466 1.2e-21 107.5 146 45.9
QL08p064335 Quercus lobata HOM05D009452 ORTHO05D015549 4.7e-21 105.5 130 49.2
Potri.013G083700 Populus trichocarpa HOM05D009452 ORTHO05D010466 8.1e-21 104.8 202 41.6
TWI73G1136 Tripterygium wilfordii HOM05D009452 ORTHO05D010466 3.1e-20 102.8 246 35.4
Thecc.10G173600 Theobroma cacao HOM05D009452 ORTHO05D010466 5.2e-20 102.1 121 51.2
Duzib106G0033 Durio zibethinus HOM05D009452 ORTHO05D010466 6.8e-20 101.7 135 48.1
CiPaw.02G197600 Carya illinoinensis HOM05D009452 ORTHO05D015549 1.3e-18 97.4 129 47.3
Gohir.A05G280100 Gossypium hirsutum HOM05D009452 ORTHO05D010466 1.7e-18 97.1 133 51.1
Ciclev10033088m.g Citrus clementina HOM05D009452 ORTHO05D010466 4.9e-18 95.5 112 49.1
Cpa.g.sc19.95 Carica papaya HOM05D010126 ORTHO05D010466 6.4e-18 95.1 162 42.0
Eucgr.G03118 Eucalyptus grandis HOM05D009452 ORTHO05D010466 1.9e-17 93.6 138 47.1
GSVIVG01032717001 Vitis vinifera HOM05D009452 ORTHO05D010466 2.4e-17 93.2 210 37.6
MD01G1162300 Malus domestica HOM05D015621 ORTHO05D015549 1.6e-16 90.5 199 43.2
MD07G1230300 Malus domestica HOM05D015621 ORTHO05D015549 2.1e-16 90.1 204 39.2
THA.LOC104824352 Tarenaya hassleriana HOM05D010126 ORTHO05D010466 2.7e-16 89.7 146 46.6
PGR142G1927 Punica granatum HOM05D009452 ORTHO05D010466 6.0e-16 88.6 217 35.0
Gohir.D05G281900 Gossypium hirsutum HOM05D009452 ORTHO05D010466 1.7e-15 87.0 130 48.5
Gorai.009G295300 Gossypium raimondii HOM05D009452 ORTHO05D010466 1.7e-15 87.0 130 48.5
COL.COLO4_38187 Corchorus olitorius HOM05D009452 ORTHO05D010466 1.1e-14 84.3 83 59.0
RcHm_v2.0_Chr1g0371541 Rosa chinensis HOM05D015621 ORTHO05D015549 7.3e-14 81.6 133 42.9
CANSAT56G1042 Cannabis sativa HOM05D015621 ORTHO05D015549 1.2e-13 80.9 145 40.7
Atru.chr12.144 Acer truncatum HOM05D060625 ORTHO05D010466 2.1e-13 80.1 106 46.2
Nn2g11084 Nelumbo nucifera HOM05D025597 ORTHO05D010466 2.1e-13 80.1 208 35.1
FAN03G1751 Fragaria x ananassa HOM05D015621 ORTHO05D015549 1.1e-12 77.8 122 45.1
MBI15_g33037_MAGBIO Magnolia biondii HOM05D009452 ORTHO05D010466 3.1e-12 76.3 201 40.3
FAN06G2805 Fragaria x ananassa HOM05D015621 ORTHO05D015549 5.2e-12 75.5 122 44.3
FAN01G0195 Fragaria x ananassa HOM05D015621 ORTHO05D015549 2.0e-11 73.6 122 43.4
PGR044G2337 Punica granatum HOM05D009452 ORTHO05D010466 2.0e-11 73.6 97 41.2
arahy.Tifrunner.gnm1.ann1.HU7Z0W Arachis hypogaea HOM05D010487 ORTHO05D011788 2.6e-11 73.2 209 32.5
FvH4_7g25540 Fragaria vesca HOM05D015621 ORTHO05D015549 3.4e-11 72.8 122 43.4
arahy.Tifrunner.gnm1.ann1.MU8G5E Arachis hypogaea HOM05D010487 ORTHO05D011788 4.4e-11 72.4 208 34.6
BcaB01g00010 Brassica carinata HOM05D010126 ORTHO05D010466 5.8e-11 72.0 116 43.1
Sed0024289 Sechium edule HOM05D022193 ORTHO05D010466 7.6e-11 71.6 215 31.2
Gohir.D05G317251 Gossypium hirsutum HOM05D009452 ORTHO05D010466 9.9e-11 71.2 116 40.5
vmacro09981 Vaccinium macrocarpon HOM05D016735 ORTHO05D012140 9.9e-11 71.2 186 34.9
arahy.Tifrunner.gnm1.ann1.SXB28M Arachis hypogaea HOM05D010487 ORTHO05D011788 8.4e-10 68.2 133 42.1
CSS0035018 Camellia sinensis var. sinensis HOM05D016735 ORTHO05D012140 8.4e-10 68.2 73 52.1
BcaC08g44773 Brassica carinata HOM05D010126 ORTHO05D010466 1.1e-09 67.8 120 42.5
C06p23440 Brassica napus HOM05D010126 ORTHO05D010466 1.1e-09 67.8 120 42.5
Lsat_1_v5_gn_8_13420 Lactuca sativa HOM05D023735 ORTHO05D025302 1.1e-09 67.8 74 52.7
Aa31LG10G11160 Aethionema arabicum HOM05D010126 ORTHO05D010466 1.4e-09 67.4 52 69.2
CsaV3_6G002160 Cucumis sativus L. HOM05D022193 ORTHO05D010466 1.4e-09 67.4 130 38.5
Thhalv10006172m.g Eutrema salsugineum HOM05D010126 ORTHO05D010466 1.9e-09 67.0 121 40.5
Glyma.14G053800 Glycine max HOM05D010487 ORTHO05D011788 2.4e-09 66.6 148 40.5
Phvul.001G248500 Phaseolus vulgaris HOM05D010487 ORTHO05D011788 4.1e-09 65.9 132 38.6
BolC6t37518H Brassica oleracea HOM05D010126 ORTHO05D010466 5.4e-09 65.5 119 42.0
SGA_v2.0_scaffold282G46940 Striga asiatica HOM05D028832 ORTHO05D012140 5.4e-09 65.5 99 46.5
MELO3C019993.2 Cucumis melo HOM05D022193 ORTHO05D010466 7.1e-09 65.1 150 35.3
Lalb_Chr17g0347061 Lupinus albus HOM05D010487 ORTHO05D011788 7.1e-09 65.1 231 31.2
A07p22860 Brassica napus HOM05D010126 ORTHO05D010466 9.2e-09 64.7 120 40.8
Sp5g06250 Schrenkiella parvula HOM05D010126 ORTHO05D010466 1.2e-08 64.3 116 39.7
VMungo0647G0931 Vigna mungo HOM05D010487 ORTHO05D011788 1.2e-08 64.3 117 42.7
arahy.Tifrunner.gnm1.ann1.LNGA9N Arachis hypogaea HOM05D010487 ORTHO05D011788 2.1e-08 63.5 120 40.0
A09p49230 Brassica napus HOM05D010126 ORTHO05D010466 2.1e-08 63.5 122 47.5
BraA09t40376Z Brassica rapa HOM05D010126 ORTHO05D010466 2.7e-08 63.2 116 47.4
AUR62012338 Chenopodium quinoa HOM05D017273 ORTHO05D019523 2.7e-08 63.2 115 36.5
BcaB02g07661 Brassica carinata HOM05D010126 ORTHO05D010466 4.6e-08 62.4 117 39.3
BraA07t29952Z Brassica rapa HOM05D010126 ORTHO05D010466 4.6e-08 62.4 120 40.0
CARHR166410 Cardamine hirsuta HOM05D010126 ORTHO05D010466 4.6e-08 62.4 141 35.5
Sc11g0005670 Simmondsia chinensis HOM05D017273 ORTHO05D019523 4.6e-08 62.4 129 33.3
HPP92_010617 Vanilla planifolia HOM05D009452 ORTHO05D010466 4.6e-08 62.4 90 42.2
Lalb_Chr04g0250301 Lupinus albus HOM05D010487 ORTHO05D011788 6.0e-08 62.0 197 30.5
AUR62022982 Chenopodium quinoa HOM05D017273 ORTHO05D019523 7.8e-08 61.6 115 37.4
ClCG11G005820 Citrullus lanatus HOM05D022193 ORTHO05D010466 1.0e-07 61.2 143 35.0
Nitab4.5_0000263g0150 Nicotiana tabacum HOM05D013047 ORTHO05D012140 1.3e-07 60.8 114 41.2
BcaC07g39942 Brassica carinata HOM05D010126 ORTHO05D010466 1.7e-07 60.5 135 42.2
Lalb_Chr10g0105401 Lupinus albus HOM05D010487 ORTHO05D011788 1.7e-07 60.5 221 29.9
Sed0025520 Sechium edule HOM05D022193 ORTHO05D010466 1.7e-07 60.5 226 31.0
VMungo1383G3638 Vigna mungo HOM05D010487 ORTHO05D011788 2.3e-07 60.1 132 37.9
Ah.16g104130 Amaranthus hybridus HOM05D017273 ORTHO05D019523 3.9e-07 59.3 126 35.7
AT3G56250 Arabidopsis thaliana HOM05D010126 ORTHO05D010466 3.9e-07 59.3 128 39.1
Nitab4.5_0002226g0010 Nicotiana tabacum HOM05D013047 ORTHO05D012140 3.9e-07 59.3 121 40.5
MSTRG.8364 Avicennia marina HOM05D013047 ORTHO05D012140 5.1e-07 58.9 71 53.5
C08p31580 Brassica napus HOM05D010126 ORTHO05D010466 5.1e-07 58.9 128 40.6
BolC8t50779H Brassica oleracea HOM05D010126 ORTHO05D010466 5.1e-07 58.9 128 40.6
ECA238G3286 Erigeron canadensis HOM05D000012 ORTHO05D000869 5.1e-07 58.9 89 40.4
Nitab4.5_0002371g0010 Nicotiana tabacum HOM05D013047 ORTHO05D012140 5.1e-07 58.9 120 41.7
Carub.0005s2303 Capsella rubella HOM05D010126 ORTHO05D010466 8.7e-07 58.2 127 35.4
Oeu017761.1 Olea europaea HOM05D013047 ORTHO05D012140 8.7e-07 58.2 89 47.2
HanXRQChr08g0222521 Helianthus annuus HOM05D023735 ORTHO05D025302 1.5e-06 57.4 99 42.4
Duzib114G0872 Durio zibethinus HOM05D009452 ORTHO05D010466 2.5e-06 56.6 62 53.2
AL5G37570 Arabidopsis lyrata HOM05D010126 ORTHO05D010466 3.3e-06 56.2 132 34.1
Haze_17327 Corylus avellana HOM05D009452 ORTHO05D015549 4.3e-06 55.8 145 37.9
CSS0008709 Camellia sinensis var. sinensis HOM05D016735 ORTHO05D012140 5.6e-06 55.5 181 30.9
Glyma.18G021900 Glycine max HOM05D010487 ORTHO05D011788 5.6e-06 55.5 144 36.1
Cc02_g05660 Coffea canephora HOM05D013047 ORTHO05D012140 7.3e-06 55.1 102 36.3


User provided reference genes

Program Settings