Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 4.8e-111 404.4 195 100.0
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 8.9e-65 250.8 190 63.7
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 4.6e-61 238.4 191 61.8
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 7.5e-56 221.1 192 59.9
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 4.1e-54 215.3 182 59.9
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 5.2e-49 198.4 175 56.0
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 2.0e-48 196.4 185 55.7
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 2.6e-48 196.1 202 53.5
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.3e-47 193.7 174 57.5
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 8.3e-47 191.0 174 59.8
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.7e-45 186.0 185 54.1
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.3e-44 183.7 180 55.6
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 1.9e-43 179.9 161 57.1
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 4.3e-43 178.7 187 52.4
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.2e-42 177.2 185 52.4
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 2.6e-40 169.5 190 50.5
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 9.9e-40 167.5 163 53.4
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 1.3e-39 167.2 159 58.5
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 2.9e-39 166.0 161 54.7
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 1.4e-38 163.7 180 50.6
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 2.4e-38 162.9 167 54.5
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 7.1e-38 161.4 198 48.5
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.2e-37 160.6 164 54.3
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 2.7e-37 159.5 175 52.6
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 3.5e-37 159.1 199 45.2
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 6.0e-37 158.3 150 55.3
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 5.1e-36 155.2 158 57.0
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 3.3e-35 152.5 187 50.8
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 9.6e-35 151.0 172 48.8
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 9.6e-35 151.0 170 48.8
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.2e-34 150.6 189 48.7
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 1.6e-34 150.2 194 45.4
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 3.6e-34 149.1 160 51.2
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 4.7e-34 148.7 168 49.4
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 8.1e-34 147.9 178 48.3
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 1.1e-33 147.5 160 51.9
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 1.8e-33 146.7 202 45.0
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 2.4e-33 146.4 169 47.9
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 2.4e-33 146.4 160 50.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 2.4e-33 146.4 173 50.3
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 6.9e-33 144.8 150 53.3
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 6.9e-33 144.8 192 44.3
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 9.0e-33 144.4 175 49.7
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 1.5e-32 143.7 174 47.7
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 1.5e-32 143.7 182 47.3
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 4.4e-32 142.1 174 48.9
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 7.6e-32 141.4 150 52.7
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.7e-31 140.2 184 43.5
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 3.8e-31 139.0 187 41.7
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 4.9e-31 138.7 151 53.0
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.1e-30 137.5 178 43.3
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 1.1e-30 137.5 174 48.3
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 2.4e-30 136.3 181 43.6
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 2.4e-30 136.3 161 48.4
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 3.5e-29 132.5 178 42.7
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 7.8e-29 131.3 168 42.3
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 1.0e-28 131.0 176 42.6
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 1.7e-28 130.2 155 48.4
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 7.3e-27 124.8 144 51.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.6e-26 123.6 180 43.3
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 4.8e-26 122.1 150 46.0
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 1.1e-25 120.9 150 45.3
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.8e-25 120.2 156 47.4
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 5.3e-25 118.6 168 41.1
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 6.9e-25 118.2 187 41.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 7.6e-24 114.8 156 46.8
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.4e-22 110.5 147 45.6
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 2.4e-22 109.8 157 42.0
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 5.4e-22 108.6 112 52.7
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 2.1e-21 106.7 158 43.0
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 6.0e-21 105.1 134 47.0
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.3e-20 103.2 80 63.8
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 3.9e-20 102.4 151 40.4
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 2.5e-19 99.8 155 43.2
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 3.3e-19 99.4 112 48.2
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.3e-19 99.4 156 40.4
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 1.6e-18 97.1 80 60.0
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 4.0e-17 92.4 111 45.0
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 5.3e-17 92.0 124 44.4
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 5.5e-14 82.0 61 68.9
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 2.7e-13 79.7 96 40.6
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 6.0e-13 78.6 197 29.4
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 1.0e-12 77.8 185 31.4
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 2.3e-12 76.6 176 30.1
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 3.0e-12 76.3 178 29.8
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 3.0e-12 76.3 195 29.7
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 3.9e-12 75.9 181 29.8
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 5.1e-12 75.5 162 30.2
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 5.1e-12 75.5 174 31.0
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 8.7e-12 74.7 171 30.4
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 1.1e-11 74.3 72 51.4
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 1.5e-11 73.9 194 30.4
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.9e-11 73.6 185 29.2
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 4.3e-11 72.4 182 29.1
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 4.3e-11 72.4 159 30.8
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 7.4e-11 71.6 184 30.4
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 7.4e-11 71.6 113 39.8
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 1.3e-10 70.9 186 29.6
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.3e-10 70.9 159 32.7
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.6e-10 70.5 193 30.6
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.1e-10 70.1 179 30.2
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 2.8e-10 69.7 189 30.2
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 2.8e-10 69.7 208 27.9
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 3.7e-10 69.3 143 32.2
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 3.7e-10 69.3 174 28.7
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 3.7e-10 69.3 159 32.1
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 6.2e-10 68.6 185 29.2
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 6.2e-10 68.6 210 27.6
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 8.2e-10 68.2 188 30.3
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 8.2e-10 68.2 169 29.0
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 1.1e-09 67.8 187 28.3
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.1e-09 67.8 188 31.9
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 1.1e-09 67.8 185 32.4
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 1.1e-09 67.8 183 27.9
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.4e-09 67.4 199 26.1
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.4e-09 67.4 169 32.5
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 1.4e-09 67.4 165 29.7
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.4e-09 67.4 195 28.2
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 1.8e-09 67.0 176 29.5
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 1.8e-09 67.0 167 29.3
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 1.8e-09 67.0 167 29.3
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.8e-09 67.0 182 28.6
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 1.8e-09 67.0 173 28.9
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.8e-09 67.0 174 28.7
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.4e-09 66.6 195 28.2
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 2.4e-09 66.6 160 30.0
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 3.1e-09 66.2 190 28.4
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 3.1e-09 66.2 214 26.6
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 3.1e-09 66.2 194 29.4
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 4.0e-09 65.9 165 29.1
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 4.0e-09 65.9 165 29.1
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 4.0e-09 65.9 168 29.2
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 4.0e-09 65.9 146 30.1
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 4.0e-09 65.9 142 33.8
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 5.3e-09 65.5 170 28.2
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 5.3e-09 65.5 176 26.1
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 5.3e-09 65.5 170 29.4
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 5.3e-09 65.5 167 31.1
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 5.3e-09 65.5 182 30.2
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 6.9e-09 65.1 175 28.0
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 6.9e-09 65.1 189 25.4
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 9.0e-09 64.7 175 26.3
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 9.0e-09 64.7 177 30.5
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.2e-08 64.3 50 66.0
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 1.2e-08 64.3 184 28.3
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 1.2e-08 64.3 169 27.8
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.2e-08 64.3 185 28.6
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.0e-08 63.5 183 30.1
AUR62012352 Chenopodium quinoa HOM05D038520 ORTHO05D009839 2.6e-08 63.2 177 31.1
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 4.5e-08 62.4 161 27.3
RcHm_v2.0_Chr4g0447101 Rosa chinensis HOM05D000727 ORTHO05D000541 5.8e-08 62.0 189 27.5
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 7.6e-08 61.6 156 27.6
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 7.6e-08 61.6 138 32.6
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 7.6e-08 61.6 186 28.0
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 1.0e-07 61.2 178 25.8
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 1.0e-07 61.2 185 28.1
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 1.0e-07 61.2 187 26.7
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 1.0e-07 61.2 128 30.5
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 1.3e-07 60.8 184 26.1
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 1.7e-07 60.5 178 27.0
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 2.2e-07 60.1 177 26.6
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 2.9e-07 59.7 167 28.1
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 3.8e-07 59.3 185 26.5
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 4.9e-07 58.9 177 26.0
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 6.5e-07 58.5 175 28.0
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 6.5e-07 58.5 196 26.5
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 6.5e-07 58.5 160 28.8
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 8.4e-07 58.2 169 26.0
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 8.4e-07 58.2 187 26.7
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 1.1e-06 57.8 165 26.1
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 1.4e-06 57.4 185 27.0
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 1.4e-06 57.4 175 28.0
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.9e-06 57.0 177 27.7
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 1.9e-06 57.0 201 27.4
MBI18_g32335_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 2.5e-06 56.6 64 46.9
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 3.2e-06 56.2 195 27.2
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 3.2e-06 56.2 159 28.9
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 4.2e-06 55.8 81 42.0
COL.COLO4_08937 Corchorus olitorius HOM05D007902 ORTHO05D009839 4.2e-06 55.8 49 55.1
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 7.1e-06 55.1 81 42.0
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 7.1e-06 55.1 81 42.0
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 7.1e-06 55.1 177 26.0
MBI19_g06976_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 7.1e-06 55.1 59 47.5
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 7.1e-06 55.1 146 26.7
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 9.3e-06 54.7 173 26.0


User provided reference genes

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