Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G135966 Manihot esculenta HOM05D001518 ORTHO05D006498 1.2e-73 279.6 136 100.0
Manes.10G007200 Manihot esculenta HOM05D001518 ORTHO05D006498 8.2e-17 90.9 51 82.4
TWI53G0536 Tripterygium wilfordii HOM05D001518 ORTHO05D006498 5.9e-15 84.7 58 62.1
FvH4_7g25380 Fragaria vesca HOM05D001518 ORTHO05D006498 1.7e-14 83.2 58 60.3
FAN06G3540 Fragaria x ananassa HOM05D001518 ORTHO05D006498 1.7e-14 83.2 58 60.3
RcHm_v2.0_Chr1g0371311 Rosa chinensis HOM05D001518 ORTHO05D006498 2.2e-14 82.8 58 60.3
FAN03G1866 Fragaria x ananassa HOM05D001518 ORTHO05D006498 2.9e-14 82.4 58 58.6
MD01G1160000 Malus domestica HOM05D001518 ORTHO05D006498 5.0e-14 81.6 54 63.0
FAN01G2884 Fragaria x ananassa HOM05D001518 ORTHO05D006498 6.5e-14 81.3 58 60.3
PGR044G0181 Punica granatum HOM05D001518 ORTHO05D006498 6.5e-14 81.3 58 60.3
Haze_17295 Corylus avellana HOM05D001518 ORTHO05D006498 1.1e-13 80.5 58 56.9
Dinv21799 Davidia involucrata HOM05D001518 ORTHO05D006498 1.4e-13 80.1 58 58.6
Ciclev10030811m.g Citrus clementina HOM05D001518 ORTHO05D006498 1.9e-13 79.7 58 60.3
Sc11g0005470 Simmondsia chinensis HOM05D001518 ORTHO05D006498 1.9e-13 79.7 58 62.1
Migut.F00620 Erythranthe guttata HOM05D001518 ORTHO05D006498 2.5e-13 79.3 58 55.2
CiPaw.01G302600 Carya illinoinensis HOM05D001518 ORTHO05D006498 3.2e-13 79.0 54 61.1
ClCG11G005950 Citrullus lanatus HOM05D001518 ORTHO05D006498 3.2e-13 79.0 58 60.3
QL08p064026 Quercus lobata HOM05D001518 ORTHO05D006498 3.2e-13 79.0 60 61.7
THA.LOC104810131 Tarenaya hassleriana HOM05D001518 ORTHO05D006498 5.5e-13 78.2 58 58.6
vmacro06911 Vaccinium macrocarpon HOM05D001518 ORTHO05D006498 5.5e-13 78.2 58 56.9
Actinidia29734 Actinidia chinensis HOM05D001518 ORTHO05D006498 7.2e-13 77.8 58 56.9
CsaV3_6G002050 Cucumis sativus L. HOM05D001518 ORTHO05D006498 7.2e-13 77.8 58 56.9
Sabra08G0055300 Salix brachista HOM05D001518 ORTHO05D006498 7.2e-13 77.8 58 56.9
GSVIVG01032735001 Vitis vinifera HOM05D001518 ORTHO05D006498 9.4e-13 77.4 58 56.9
AT3G56140 Arabidopsis thaliana HOM05D001518 ORTHO05D006498 1.2e-12 77.0 58 56.9
CANSAT56G0726 Cannabis sativa HOM05D001518 ORTHO05D006498 1.2e-12 77.0 53 64.2
PSO384G4720 Papaver somniferum HOM05D001518 ORTHO05D006498 1.2e-12 77.0 58 56.9
Rhsim03G0148300 Rhododendron simsii HOM05D001518 ORTHO05D006498 1.2e-12 77.0 58 55.2
Hund15866 Selenicereus undatus HOM05D001518 ORTHO05D006498 1.2e-12 77.0 57 57.9
A04p30770 Brassica napus HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
C04p68170 Brassica napus HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
BolC4t28323H Brassica oleracea HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
BraA04t18535Z Brassica rapa HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
Carub.0004s2264 Capsella rubella HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
MELO3C008325.2 Cucumis melo HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 55.2
TAR623G1694 Trochodendron aralioides HOM05D001518 ORTHO05D006498 1.6e-12 76.6 58 56.9
AUR62022961 Chenopodium quinoa HOM05D001518 ORTHO05D006498 2.1e-12 76.3 58 55.2
Hma1.2p1_1687F.1_g297510 Hydrangea macrophylla HOM05D001518 ORTHO05D006498 2.1e-12 76.3 58 53.4
PSO339G3904 Papaver somniferum HOM05D001518 ORTHO05D006498 2.1e-12 76.3 58 56.9
AL5G37460 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 2.7e-12 75.9 58 55.2
EL10Ac2g04913 Beta vulgaris HOM05D001518 ORTHO05D006498 2.7e-12 75.9 55 58.2
C04p68190 Brassica napus HOM05D001518 ORTHO05D006498 2.7e-12 75.9 53 62.3
Ca_15169_v3 Cicer arietinum L. HOM05D001518 ORTHO05D006498 3.6e-12 75.5 58 56.9
Thhalv10005804m.g Eutrema salsugineum HOM05D001518 ORTHO05D006498 3.6e-12 75.5 58 55.2
Lj6g0017401 Lotus japonicus HOM05D001518 ORTHO05D006498 3.6e-12 75.5 58 55.2
Sp4g22720 Schrenkiella parvula HOM05D001518 ORTHO05D006498 4.7e-12 75.1 58 56.9
AT2G40400 Arabidopsis thaliana HOM05D001518 ORTHO05D006498 6.1e-12 74.7 58 53.4
Thecc.09G230400 Theobroma cacao HOM05D001518 ORTHO05D006498 6.1e-12 74.7 58 56.9
Cfa001256 Carpinus fangiana HOM05D001518 ORTHO05D006498 7.9e-12 74.3 58 53.4
AUR62012321 Chenopodium quinoa HOM05D001518 ORTHO05D006498 7.9e-12 74.3 58 53.4
ECA238G1259 Erigeron canadensis HOM05D001518 ORTHO05D006498 7.9e-12 74.3 54 53.7
Nn2g11022 Nelumbo nucifera HOM05D001518 ORTHO05D006498 7.9e-12 74.3 58 56.9
Aa31LG5G19180 Aethionema arabicum HOM05D001518 ORTHO05D006498 1.0e-11 73.9 58 53.4
Prupe.2G258000 Prunus persica HOM05D001518 ORTHO05D006498 1.0e-11 73.9 54 59.3
AL4G38220 Arabidopsis lyrata HOM05D001518 ORTHO05D006498 1.4e-11 73.6 58 51.7
BcaC08g44762 Brassica carinata HOM05D001518 ORTHO05D006498 1.4e-11 73.6 58 55.2
Lj8A60T48 Lonicera japonica HOM05D001518 ORTHO05D006498 1.4e-11 73.6 58 53.4
arahy.Tifrunner.gnm1.ann1.1N0RH8 Arachis hypogaea HOM05D001518 ORTHO05D006498 1.8e-11 73.2 58 55.2
Os01g0826900 Oryza sativa ssp. japonica HOM05D001518 ORTHO05D006498 1.8e-11 73.2 53 60.4
Aa31LG10G11040 Aethionema arabicum HOM05D001518 ORTHO05D006498 2.3e-11 72.8 53 56.6
Carub.0005s2289 Capsella rubella HOM05D001518 ORTHO05D006498 2.3e-11 72.8 60 56.7
Duzib168G1941 Durio zibethinus HOM05D001518 ORTHO05D006498 3.0e-11 72.4 58 56.9
Medtr3g071970 Medicago truncatula HOM05D001518 ORTHO05D006498 3.0e-11 72.4 58 53.4
arahy.Tifrunner.gnm1.ann1.73F65L Arachis hypogaea HOM05D001518 ORTHO05D006498 3.9e-11 72.0 58 53.4
ATR0594G213 Amborella trichopoda HOM05D001518 ORTHO05D006498 5.1e-11 71.6 58 50.0
Phvul.001G247100 Phaseolus vulgaris HOM05D001518 ORTHO05D006498 5.1e-11 71.6 58 53.4
Glyma.18G023200 Glycine max HOM05D001518 ORTHO05D006498 6.7e-11 71.2 58 53.4
TPR.G29216 Trifolium pratense HOM05D001518 ORTHO05D006498 6.7e-11 71.2 58 53.4
A07p22800 Brassica napus HOM05D001518 ORTHO05D006498 8.8e-11 70.9 58 53.4
C06p23300 Brassica napus HOM05D001518 ORTHO05D006498 8.8e-11 70.9 58 53.4
BolC6t37503H Brassica oleracea HOM05D001518 ORTHO05D006498 8.8e-11 70.9 58 53.4
BraA07t29945Z Brassica rapa HOM05D001518 ORTHO05D006498 8.8e-11 70.9 58 53.4
Zm00001eb149270 Zea mays HOM05D001518 ORTHO05D006498 8.8e-11 70.9 50 62.0
Ah.16g104010 Amaranthus hybridus HOM05D001518 ORTHO05D006498 1.1e-10 70.5 58 50.0
Thhalv10016304m.g Eutrema salsugineum HOM05D001518 ORTHO05D006498 1.1e-10 70.5 53 54.7
Lalb_Chr08g0231381 Lupinus albus HOM05D001518 ORTHO05D006498 1.1e-10 70.5 58 51.7
Psat5g126120 Pisum sativum HOM05D001518 ORTHO05D006498 1.1e-10 70.5 58 51.7
SGA_v2.0_scaffold44G16654 Striga asiatica HOM05D001518 ORTHO05D006498 1.1e-10 70.5 58 51.7
BcaB02g07667 Brassica carinata HOM05D001518 ORTHO05D006498 1.5e-10 70.1 59 55.9
SGA_v2.0_scaffold145G36000 Striga asiatica HOM05D001518 ORTHO05D006498 1.5e-10 70.1 58 51.7
Aqoxy2G00769 Aquilegia oxysepala HOM05D001518 ORTHO05D006498 2.0e-10 69.7 58 51.7
VMungo1383G3076 Vigna mungo HOM05D001518 ORTHO05D006498 2.0e-10 69.7 53 56.6
CARHR135480 Cardamine hirsuta HOM05D001518 ORTHO05D006498 2.6e-10 69.3 58 48.3
CDE07G0354 Ceratophyllum demersum HOM05D001518 ORTHO05D006498 2.6e-10 69.3 58 51.7
Cc02_g05880 Coffea canephora HOM05D001518 ORTHO05D006498 2.6e-10 69.3 58 50.0
Sp5g06390 Schrenkiella parvula HOM05D001518 ORTHO05D006498 2.6e-10 69.3 58 51.7
Glyma.11G233800 Glycine max HOM05D001518 ORTHO05D006498 3.3e-10 68.9 58 51.7
Gohir.A07G124600 Gossypium hirsutum HOM05D001518 ORTHO05D006498 3.3e-10 68.9 58 51.7
Gorai.001G139200 Gossypium raimondii HOM05D001518 ORTHO05D006498 4.4e-10 68.6 58 51.7
Lj1C962G10 Lonicera japonica HOM05D001518 ORTHO05D006498 4.4e-10 68.6 75 45.3
Lalb_Chr11g0075101 Lupinus albus HOM05D001518 ORTHO05D006498 5.7e-10 68.2 58 50.0
Nitab4.5_0002854g0050 Nicotiana tabacum HOM05D001518 ORTHO05D006498 5.7e-10 68.2 58 51.7
COL.COLO4_24867 Corchorus olitorius HOM05D001518 ORTHO05D006498 7.4e-10 67.8 58 50.0
Eucgr.J00163 Eucalyptus grandis HOM05D001518 ORTHO05D006498 7.4e-10 67.8 58 50.0
Nitab4.5_0001291g0130 Nicotiana tabacum HOM05D001518 ORTHO05D006498 1.7e-09 66.6 58 50.0
Sed0027098 Sechium edule HOM05D001518 ORTHO05D006498 1.7e-09 66.6 58 50.0
Lsat_1_v5_gn_2_125780 Lactuca sativa HOM05D001518 ORTHO05D006498 2.2e-09 66.2 54 50.0
HPP92_019734 Vanilla planifolia HOM05D001518 ORTHO05D006498 2.2e-09 66.2 53 56.6
DCAR_011861 Daucus carota HOM05D001518 ORTHO05D006498 2.8e-09 65.9 54 51.9
HanXRQChr07g0203501 Helianthus annuus HOM05D001518 ORTHO05D006498 2.8e-09 65.9 54 51.9
SalBow3G0728 Salvia bowleyana HOM05D001518 ORTHO05D006498 2.8e-09 65.9 58 44.8
Gohir.D07G128900 Gossypium hirsutum HOM05D001518 ORTHO05D006498 3.7e-09 65.5 58 50.0
Sed0021910 Sechium edule HOM05D001518 ORTHO05D006498 3.7e-09 65.5 132 34.1
PGSC0003DMG400023943 Solanum tuberosum HOM05D001518 ORTHO05D006498 6.3e-09 64.7 58 46.6
unitig_62.g23927 Utricularia gibba HOM05D001518 ORTHO05D006498 1.1e-08 63.9 58 46.6
CAN.G659.7 Capsicum annuum HOM05D001518 ORTHO05D006498 2.4e-08 62.8 58 44.8
Solyc06g050620.3 Solanum lycopersicum HOM05D001518 ORTHO05D006498 2.4e-08 62.8 58 46.6
Sopen06g016190 Solanum pennellii HOM05D001518 ORTHO05D006498 2.4e-08 62.8 58 46.6
Zm00001eb351960 Zea mays HOM05D001518 ORTHO05D006498 7.0e-08 61.2 53 50.9
SalBow5G2006 Salvia bowleyana HOM05D001518 ORTHO05D006498 1.3e-06 57.0 58 41.4


User provided reference genes

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