Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.8e-285 984.6 480 100.0
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-238 829.3 479 84.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 5.5e-209 731.1 469 74.8
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.2e-208 729.9 470 74.7
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.0e-207 725.3 476 73.1
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.8e-205 718.8 474 75.3
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 8.2e-205 717.2 471 73.0
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.4e-204 715.7 458 75.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 9.1e-204 713.8 468 72.4
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.6e-203 713.0 478 71.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 5.9e-203 711.1 476 70.8
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.0e-202 710.3 474 72.2
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.5e-202 707.6 470 73.6
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.5e-201 705.7 475 71.2
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.2e-201 704.9 476 72.3
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.5e-201 704.5 475 71.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 4.7e-200 701.4 457 72.9
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 8.0e-200 700.7 451 72.5
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.4e-199 699.9 454 72.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.0e-199 698.4 471 70.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 8.8e-199 697.2 467 71.3
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.5e-198 696.4 475 68.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.5e-198 696.4 465 70.8
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.6e-198 695.7 469 71.2
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.4e-198 695.3 457 72.4
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.4e-198 694.9 472 70.6
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 5.7e-198 694.5 464 72.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.3e-197 693.3 464 71.3
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.3e-197 693.3 469 70.1
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.8e-197 691.4 475 68.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.8e-197 691.4 461 72.2
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.4e-196 689.9 447 72.9
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-196 689.5 475 68.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.4e-196 689.1 478 69.0
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.4e-196 689.1 478 69.0
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.4e-196 689.1 463 70.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.4e-196 689.1 491 69.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.1e-196 688.7 478 69.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 3.1e-196 688.7 445 73.0
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 7.0e-196 687.6 453 73.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 9.1e-196 687.2 466 70.2
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.2e-195 686.8 466 70.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.2e-195 686.8 461 71.4
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.0e-195 686.0 464 71.1
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 4.5e-195 684.9 479 69.1
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 5.9e-195 684.5 464 71.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.7e-195 684.1 478 68.8
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.3e-194 683.3 462 70.6
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.9e-194 682.2 470 71.1
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.9e-194 682.2 465 70.3
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.5e-194 680.6 478 68.2
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.2e-192 676.8 430 74.7
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 2.7e-192 675.6 467 69.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.6e-192 675.2 453 72.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.0e-191 673.7 458 69.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-191 673.3 467 67.5
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.4e-191 673.3 459 70.2
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.8e-191 672.9 449 71.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.0e-191 671.8 459 69.9
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 6.8e-191 671.0 466 68.2
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 6.8e-191 671.0 531 65.2
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.4e-190 668.7 459 69.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 4.4e-190 668.3 459 69.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 9.8e-190 667.2 444 70.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 9.8e-190 667.2 412 77.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.2e-189 666.0 478 66.9
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 4.8e-189 664.8 471 67.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 4.8e-189 664.8 472 67.8
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 6.3e-189 664.5 471 66.9
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.3e-189 664.1 492 66.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.8e-188 662.9 465 67.3
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-188 662.1 464 66.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 7.0e-188 661.0 465 66.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.1e-188 660.6 462 68.6
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.7e-187 659.1 452 68.4
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 3.8e-186 655.2 465 66.2
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 6.6e-186 654.4 474 67.9
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 8.6e-186 654.1 465 66.5
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 8.6e-186 654.1 464 66.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.9e-185 652.9 430 70.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.5e-185 652.5 457 67.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.5e-185 652.5 454 67.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.5e-185 652.5 476 66.6
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-185 652.5 469 67.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.5e-185 652.5 458 66.8
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.2e-185 651.7 465 66.2
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-184 650.2 453 68.9
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 8.0e-184 647.5 464 66.2
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.0e-183 645.6 467 67.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 3.0e-183 645.6 466 66.7
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.0e-183 645.2 414 74.4
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.2e-183 644.8 561 58.3
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 8.9e-183 644.0 459 66.4
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 9.8e-182 640.6 459 66.0
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 2.2e-181 639.4 459 66.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.2e-181 639.4 462 65.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.8e-181 639.0 479 64.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-180 637.1 462 65.8
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-180 637.1 486 66.5
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.8e-180 636.3 436 68.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.4e-180 636.0 461 65.1
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.2e-180 635.6 477 63.9
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 5.4e-180 634.8 469 64.4
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 5.4e-180 634.8 469 64.4
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 5.4e-180 634.8 469 64.4
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.9e-178 628.6 455 66.4
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.6e-178 627.9 469 63.5
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 6.6e-178 627.9 462 65.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.1e-177 627.1 469 63.5
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 4.3e-177 625.2 466 64.8
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-176 621.7 390 75.4
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 8.0e-176 620.9 487 62.0
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.0e-175 618.6 378 76.7
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.8e-175 617.8 490 62.4
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.0e-174 616.3 410 71.5
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.7e-173 612.1 457 65.0
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 6.4e-173 611.3 443 65.5
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.2e-172 609.0 560 55.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.2e-171 607.1 467 63.4
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.2e-171 607.1 463 63.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.2e-171 607.1 469 64.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.0e-170 604.0 480 64.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 3.6e-168 595.5 455 63.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 4.0e-167 592.0 480 62.5
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.5e-166 590.1 445 64.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.9e-165 585.1 402 66.9
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 6.4e-165 584.7 425 65.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 6.4e-165 584.7 457 63.2
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.1e-164 582.0 601 51.6
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.7e-162 576.6 426 66.4
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.3e-161 572.4 423 66.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.2e-160 568.2 478 59.6
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.9e-157 559.3 477 59.5
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 9.6e-145 517.7 491 54.6
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.7e-139 499.6 390 63.6
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.9e-137 493.4 471 53.3
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.6e-137 491.9 463 55.5
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.5e-134 483.8 442 52.7
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.4e-132 476.5 448 54.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.6e-131 472.2 321 70.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.4e-126 456.1 453 50.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.7e-121 438.7 399 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.1e-115 420.2 504 44.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 7.7e-110 401.7 300 66.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.0e-101 372.5 262 70.2
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.5e-84 317.8 296 54.1
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.9e-72 276.2 181 68.5
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.7e-64 250.0 199 63.8
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.0e-54 217.6 208 53.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.6e-49 200.7 160 60.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 6.0e-46 189.5 101 91.1
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 3.1e-42 177.2 302 35.4
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-39 168.7 120 65.0
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.6e-35 153.7 434 29.3
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 6.2e-35 152.9 112 73.2
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.8e-34 151.4 149 54.4
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-34 151.0 112 72.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.0e-29 135.6 110 60.0
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.9e-24 117.5 78 69.2
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 4.9e-24 116.7 100 59.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.9e-23 114.8 86 62.8
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.0e-21 107.5 71 66.2
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.6e-20 103.2 67 67.2
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.3e-18 96.7 112 53.6
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.9e-18 96.3 62 67.7
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 8.4e-16 89.4 67 68.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.1e-15 86.3 48 85.4
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 3.4e-09 67.4 48 64.6
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 4.5e-09 67.0 48 64.6
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.6e-09 66.2 58 56.9
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.9e-08 64.3 45 66.7
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 9.3e-07 59.3 53 54.7
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 1.6e-06 58.5 61 42.6
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 4.6e-06 57.0 61 41.0


User provided reference genes

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