Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 3.4e-147 525.0 271 100.0
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.0e-103 380.6 271 73.4
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.0e-87 325.9 261 65.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 3.7e-85 318.9 259 63.3
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.4e-84 316.2 275 62.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.4e-84 316.2 275 63.6
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.1e-84 314.3 271 60.9
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-83 312.4 271 60.5
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.2e-81 305.4 263 62.0
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 3.6e-80 302.4 262 58.8
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.1e-80 301.6 258 61.2
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 8.0e-80 301.2 271 59.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.4e-79 300.4 278 57.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 8.8e-79 297.7 275 60.7
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.6e-78 296.2 279 57.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 2.2e-77 293.1 272 58.8
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.4e-76 290.4 261 59.0
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.1e-76 287.7 261 59.8
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.6e-75 287.0 269 59.1
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 4.5e-75 285.4 266 55.6
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.7e-74 283.5 264 57.2
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.2e-74 283.1 271 58.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.9e-74 282.7 264 56.4
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.8e-74 282.3 258 58.5
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.8e-74 282.3 259 57.5
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-74 282.3 259 57.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-74 282.3 259 57.5
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.5e-74 281.6 264 56.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 8.5e-74 281.2 263 58.2
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-73 280.8 262 56.1
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.1e-73 280.8 262 56.9
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-73 280.0 264 56.4
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 4.2e-73 278.9 275 56.0
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.1e-72 275.0 263 58.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.0e-72 274.6 263 58.6
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 8.0e-72 274.6 264 57.2
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.4e-71 273.9 265 54.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.3e-71 273.1 269 55.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-71 272.3 267 54.3
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.2e-71 271.9 273 56.4
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 8.8e-71 271.2 269 56.9
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 8.8e-71 271.2 271 55.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.5e-70 270.4 268 53.4
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.6e-70 269.6 263 57.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.4e-70 268.9 267 54.7
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 5.7e-70 268.5 265 54.0
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.5e-70 268.1 267 53.6
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.7e-70 267.7 262 55.3
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.3e-69 267.3 252 58.3
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.3e-69 267.3 263 55.9
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-69 266.5 268 53.0
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.8e-69 266.2 261 54.4
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 3.7e-69 265.8 269 55.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.7e-69 265.8 268 52.6
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 4.8e-69 265.4 263 55.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-67 260.4 228 59.6
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-66 256.9 228 58.8
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.9e-66 256.1 268 51.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.9e-66 256.1 266 56.8
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.9e-66 256.1 259 54.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 5.0e-66 255.4 264 52.7
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.2e-65 252.7 264 53.0
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.2e-65 252.3 264 54.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 5.2e-63 245.4 262 51.1
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.2e-62 244.2 257 53.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 7.5e-62 241.5 267 50.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.7e-61 239.2 222 58.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.4e-60 237.3 264 49.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 7.0e-60 235.0 260 49.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 7.0e-60 235.0 259 51.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.1e-60 234.6 259 49.8
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.0e-59 233.4 271 47.6
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.0e-58 231.1 243 55.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.0e-58 231.1 264 49.2
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.0e-58 231.1 170 63.5
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 8.6e-58 228.0 274 48.2
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.5e-57 225.3 261 47.5
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 7.2e-57 224.9 273 48.7
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.5e-57 224.6 203 57.1
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.2e-56 224.2 258 46.9
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.1e-56 221.9 264 47.0
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.0e-56 221.5 203 56.2
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.3e-55 219.9 259 51.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 4.0e-55 219.2 260 47.7
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.0e-55 219.2 283 46.6
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.0e-55 219.2 283 46.6
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 5.2e-55 218.8 266 50.4
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.2e-54 217.6 261 46.0
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.6e-54 216.5 260 47.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.5e-54 214.9 272 47.1
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.5e-54 214.9 272 47.1
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 9.8e-54 214.5 270 44.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.3e-53 214.2 271 48.0
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 4.9e-53 212.2 260 45.8
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.1e-52 209.5 260 45.8
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 4.1e-52 209.1 265 46.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 5.4e-52 208.8 259 45.6
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 5.4e-52 208.8 253 45.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.2e-52 208.0 261 45.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-51 207.6 199 53.3
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.7e-51 206.5 263 46.4
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.5e-51 206.1 258 48.1
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.5e-51 206.1 264 43.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.0e-50 204.5 267 48.3
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.3e-50 204.1 262 45.0
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.3e-50 204.1 258 45.7
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.3e-50 204.1 265 48.3
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.7e-50 203.8 257 48.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 5.0e-50 202.2 257 47.1
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.0e-50 202.2 264 44.7
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.6e-50 201.8 265 45.7
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 6.6e-50 201.8 259 46.7
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.2e-48 197.6 270 42.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-48 197.6 195 51.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-48 197.6 195 51.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.2e-48 197.6 264 45.1
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.1e-48 196.8 258 46.1
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.8e-48 196.4 271 43.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.6e-48 196.1 262 43.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.3e-47 193.4 202 50.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 4.0e-47 192.6 264 45.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 4.0e-47 192.6 264 45.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 3.4e-46 189.5 266 43.6
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 5.8e-46 188.7 266 44.0
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 7.5e-46 188.3 260 44.2
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.2e-45 186.8 231 45.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 4.9e-45 185.7 261 42.9
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.9e-45 185.7 202 48.5
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.4e-44 183.3 259 44.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 4.1e-44 182.6 262 41.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 5.4e-44 182.2 265 42.3
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 9.2e-44 181.4 264 43.9
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.0e-42 176.4 264 41.7
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.9e-41 173.7 176 52.8
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 2.5e-41 173.3 117 69.2
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 3.3e-41 172.9 286 38.8
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.2e-40 171.0 154 52.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.2e-40 171.0 257 42.4
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.7e-40 169.1 116 65.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.3e-39 166.8 262 39.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.2e-39 165.6 132 59.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-38 164.5 212 48.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-38 164.1 102 78.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.4e-36 155.6 200 48.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 3.5e-35 152.9 122 59.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-31 141.0 134 50.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 8.6e-26 121.7 108 51.9
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.1e-25 121.3 164 45.1
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 4.0e-23 112.8 132 46.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.2e-21 107.1 82 63.4
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.1e-15 88.2 259 30.1
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.8e-14 82.4 70 55.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.2e-13 80.5 140 30.7
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.9e-13 80.1 90 36.7
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.8e-13 79.7 164 34.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.1e-11 73.9 212 28.3
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.7e-11 73.6 285 26.3


User provided reference genes

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