Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 4.6e-115 417.9 216 100.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.1e-79 300.4 217 73.7
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.7e-77 293.1 217 73.7
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 6.8e-74 281.2 173 81.5
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 8.9e-74 280.8 218 69.7
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 1.5e-73 280.0 220 68.2
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 6.4e-72 274.6 202 71.3
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 4.1e-71 271.9 219 67.1
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 4.6e-70 268.5 213 66.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 3.9e-69 265.4 210 66.2
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 6.6e-69 264.6 216 66.7
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.1e-68 263.8 210 65.7
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.5e-68 262.7 216 66.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 5.6e-68 261.5 182 73.6
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 7.3e-68 261.2 215 65.6
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.6e-67 260.0 210 63.8
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 2.1e-67 259.6 216 65.7
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 2.1e-67 259.6 216 65.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.2e-66 255.0 207 65.2
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 6.8e-66 254.6 207 64.7
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 1.2e-65 253.8 213 64.8
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 1.5e-65 253.4 173 71.7
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 4.4e-65 251.9 219 63.9
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.2e-64 249.6 205 65.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 2.9e-64 249.2 212 67.5
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.9e-64 248.4 210 62.9
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 6.4e-64 248.1 209 61.7
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 1.4e-63 246.9 206 63.6
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 5.4e-63 245.0 213 62.0
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 7.0e-63 244.6 220 61.8
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.2e-62 243.8 163 70.6
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-62 243.0 209 62.2
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-62 243.0 209 62.2
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 2.0e-62 243.0 150 77.3
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 2.7e-62 242.7 191 62.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.7e-62 242.7 180 70.0
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.6e-62 241.9 211 61.1
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.6e-62 241.9 209 61.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 6.0e-62 241.5 209 63.6
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 7.8e-62 241.1 211 63.0
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.0e-61 240.7 210 63.3
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 1.3e-61 240.4 207 61.8
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.7e-61 240.0 201 64.7
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 3.9e-61 238.8 210 62.9
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.9e-60 236.5 214 59.8
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 9.5e-60 234.2 209 61.2
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 3.6e-59 232.3 187 65.8
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.6e-59 232.3 146 76.0
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 6.2e-59 231.5 204 61.3
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 1.8e-58 229.9 177 67.2
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.1e-58 229.2 146 75.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 4.0e-58 228.8 155 70.3
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 5.2e-58 228.4 170 68.8
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 6.8e-58 228.0 185 62.7
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 1.5e-57 226.9 212 58.0
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.6e-57 226.1 194 61.3
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 2.6e-57 226.1 209 61.2
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 5.8e-57 224.9 207 58.5
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.5e-57 224.6 177 65.0
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 9.8e-57 224.2 194 61.3
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.3e-56 223.8 188 62.2
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.3e-56 223.8 154 68.8
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 2.2e-56 223.0 201 58.2
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 2.9e-56 222.6 197 61.4
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 2.9e-56 222.6 197 60.4
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 2.9e-56 222.6 148 75.7
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 3.7e-56 222.2 183 62.3
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 6.4e-56 221.5 186 61.8
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 8.3e-56 221.1 193 59.6
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.1e-55 220.7 166 65.7
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.9e-55 219.9 217 59.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.9e-55 219.9 143 74.1
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 1.9e-55 219.9 181 66.3
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 3.2e-55 219.2 184 62.0
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 4.1e-55 218.8 198 57.6
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 5.4e-55 218.4 219 58.4
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 5.4e-55 218.4 201 59.2
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 1.6e-54 216.9 204 57.8
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 2.1e-54 216.5 158 67.7
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.3e-53 213.8 239 53.1
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 2.3e-53 213.0 238 54.6
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 2.3e-53 213.0 163 63.8
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.1e-52 210.7 192 57.8
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 9.5e-52 207.6 171 64.3
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 2.8e-51 206.1 154 70.1
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 4.9e-48 195.3 185 57.3
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 4.1e-47 192.2 131 70.2
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 3.6e-43 179.1 146 61.6
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 8.1e-43 177.9 142 65.5
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.4e-42 177.2 157 54.8
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 4.9e-40 168.7 148 54.1
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 4.9e-40 168.7 148 54.1
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 3.5e-38 162.5 118 66.1
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 6.0e-38 161.8 152 57.9
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.4e-34 149.8 148 50.7
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 4.5e-33 145.6 151 54.3
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 5.8e-33 145.2 89 78.7
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 8.4e-32 141.4 152 46.1
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.9e-23 113.6 182 35.7
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 4.2e-23 112.5 113 52.2
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.9e-20 103.6 119 52.1
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 7.4e-20 101.7 72 68.1
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.8e-16 89.4 184 37.0
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 4.2e-15 85.9 139 30.9
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 6.0e-14 82.0 149 33.6
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.9e-14 81.6 207 33.8
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 2.4e-10 70.1 135 29.6
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.6e-09 66.6 50 68.0
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 3.4e-09 66.2 68 58.8
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.2e-08 63.5 49 51.0
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 8.5e-08 61.6 34 85.3
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.4e-07 60.8 44 68.2
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 7.2e-07 58.5 39 74.4
Lalb_Chr21g0313491 Lupinus albus HOM05D007188 ORTHO05D009102 6.1e-06 55.5 28 78.6


User provided reference genes

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