Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G130500 Manihot esculenta HOM05D000162 ORTHO05D010307 2.3e-62 243.0 246 100.0
Manes.09G018580 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-17 94.7 252 50.4
Manes.09G011300 Manihot esculenta HOM05D000162 ORTHO05D000090 3.6e-15 86.3 51 84.3
Manes.09G011763 Manihot esculenta HOM05D000162 ORTHO05D000090 6.2e-15 85.5 52 80.8
Manes.09G011401 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-14 84.3 52 80.8
Manes.09G013600 Manihot esculenta HOM05D000162 ORTHO05D003288 1.4e-14 84.3 52 80.8
Manes.12G004700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-14 84.0 56 78.6
Manes.09G011632 Manihot esculenta HOM05D000162 ORTHO05D000090 2.4e-14 83.6 52 82.7
Manes.09G011961 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-14 83.2 52 82.7
Manes.09G011701 Manihot esculenta HOM05D000162 ORTHO05D000090 4.0e-14 82.8 51 82.4
Manes.09G011799 Manihot esculenta HOM05D000162 ORTHO05D000090 1.5e-13 80.9 52 78.8
Manes.09G014301 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-13 80.5 50 82.0
Manes.09G011925 Manihot esculenta HOM05D000162 ORTHO05D000090 3.4e-13 79.7 51 78.4
Manes.09G011889 Manihot esculenta HOM05D000162 ORTHO05D000090 4.5e-13 79.3 52 78.8
Manes.12G004500 Manihot esculenta HOM05D000162 ORTHO05D000090 9.9e-13 78.2 45 88.9
Manes.09G011898 Manihot esculenta HOM05D000162 ORTHO05D000090 4.9e-12 75.9 46 82.6
Manes.09G011616 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-11 74.7 45 82.2
Manes.09G011668 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-11 74.7 45 82.2
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 1.9e-11 73.9 49 75.5
Manes.09G016769 Manihot esculenta HOM05D000162 ORTHO05D000090 2.4e-11 73.6 48 77.1
Manes.09G011500 Manihot esculenta HOM05D000162 ORTHO05D000090 3.2e-11 73.2 43 83.7
Manes.09G016622 Manihot esculenta HOM05D000162 ORTHO05D000090 5.5e-11 72.4 49 71.4
Manes.09G016738 Manihot esculenta HOM05D000162 ORTHO05D000090 5.5e-11 72.4 49 71.4
Manes.09G014741 Manihot esculenta HOM05D000162 ORTHO05D000090 7.1e-11 72.0 48 75.0
Manes.07G067738 Manihot esculenta HOM05D000162 ORTHO05D003288 1.2e-10 71.2 49 71.4
Manes.09G016699 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-10 71.2 49 73.5
Manes.09G017000 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-10 71.2 49 73.5
Manes.09G011844 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-10 70.5 46 76.1
Manes.09G015400 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-10 70.5 49 73.5
Manes.09G011660 Manihot esculenta HOM05D000162 ORTHO05D000090 2.7e-10 70.1 46 76.1
Manes.09G016677 Manihot esculenta HOM05D000162 ORTHO05D000090 2.7e-10 70.1 43 81.4
Manes.09G011620 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-10 69.7 47 74.5
Manes.09G016747 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-10 69.7 49 73.5
Manes.13G004200 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-10 69.7 91 45.1
Manes.09G014860 Manihot esculenta HOM05D000162 ORTHO05D000090 6.0e-10 68.9 49 71.4
Manes.09G011709 Manihot esculenta HOM05D000162 ORTHO05D000090 7.9e-10 68.6 42 81.0
Manes.09G014621 Manihot esculenta HOM05D000162 ORTHO05D003288 7.9e-10 68.6 50 72.0
Potri.019G062332 Populus trichocarpa HOM05D024593 ORTHO05D010307 7.9e-10 68.6 50 62.0
Manes.07G067700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-09 67.8 49 71.4
Manes.09G016688 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-09 67.8 47 72.3
Manes.09G016800 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-09 67.8 46 73.9
Manes.09G011688 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 41 80.5
Manes.09G011736 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 41 80.5
Manes.09G011862 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 42 76.2
Manes.09G012500 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 46 73.9
Manes.09G015250 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 49 71.4
Manes.09G016759 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-09 67.4 49 69.4
Manes.09G011624 Manihot esculenta HOM05D000162 ORTHO05D000090 2.3e-09 67.0 49 69.4
Manes.09G012300 Manihot esculenta HOM05D000162 ORTHO05D000090 2.3e-09 67.0 43 76.7
Manes.09G011684 Manihot esculenta HOM05D000162 ORTHO05D000090 3.0e-09 66.6 43 79.1
Manes.09G011835 Manihot esculenta HOM05D000162 ORTHO05D000090 5.1e-09 65.9 47 72.3
Manes.09G016766 Manihot esculenta HOM05D010002 ORTHO05D012862 5.1e-09 65.9 49 69.4
Manes.09G016772 Manihot esculenta HOM05D000162 ORTHO05D000090 5.1e-09 65.9 48 70.8
Manes.09G016787 Manihot esculenta HOM05D000162 ORTHO05D003288 5.1e-09 65.9 49 69.4
Manes.09G016900 Manihot esculenta HOM05D000162 ORTHO05D000090 6.7e-09 65.5 44 75.0
Manes.09G012900 Manihot esculenta HOM05D000162 ORTHO05D000090 8.7e-09 65.1 41 80.5
Manes.09G011785 Manihot esculenta HOM05D050930 ORTHO05D003288 1.1e-08 64.7 42 78.6
Manes.09G011934 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-08 63.5 41 75.6
Manes.09G013700 Manihot esculenta HOM05D000162 ORTHO05D003288 2.5e-08 63.5 43 74.4
Manes.09G011772 Manihot esculenta HOM05D000162 ORTHO05D000090 3.3e-08 63.2 38 81.6
Manes.09G012000 Manihot esculenta HOM05D000162 ORTHO05D000090 3.3e-08 63.2 37 86.5
Manes.10G077117 Manihot esculenta HOM05D000162 ORTHO05D000090 3.3e-08 63.2 55 60.0
Manes.09G011604 Manihot esculenta HOM05D000162 ORTHO05D010307 4.3e-08 62.8 39 79.5
Nn4g25162 Nelumbo nucifera HOM05D000162 ORTHO05D010307 4.3e-08 62.8 50 60.0
Manes.09G016762 Manihot esculenta HOM05D000162 ORTHO05D000090 5.6e-08 62.4 43 74.4
Manes.09G011826 Manihot esculenta HOM05D031066 ORTHO05D249828 1.3e-07 61.2 42 73.8
Manes.09G011672 Manihot esculenta HOM05D000162 ORTHO05D000090 2.8e-07 60.1 39 79.5
Manes.09G014001 Manihot esculenta HOM05D000162 ORTHO05D000090 2.8e-07 60.1 39 79.5
RcHm_v2.0_Chr5g0074191 Rosa chinensis HOM05D009519 ORTHO05D010307 2.8e-07 60.1 46 58.7
Manes.09G014401 Manihot esculenta HOM05D000162 ORTHO05D249413 6.2e-07 58.9 33 84.8
Manes.09G016750 Manihot esculenta HOM05D000162 ORTHO05D000090 6.2e-07 58.9 43 72.1
RcHm_v2.0_Chr5g0076261 Rosa chinensis HOM05D009519 ORTHO05D010307 6.2e-07 58.9 50 56.0
Ciclev10006999m.g Citrus clementina HOM05D024618 ORTHO05D018209 8.1e-07 58.5 96 36.5
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 1.1e-06 58.2 44 59.1
Manes.13G006000 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-06 57.8 56 53.6
Ciclev10007125m.g Citrus clementina HOM05D024618 ORTHO05D000090 1.8e-06 57.4 96 34.4
Manes.09G011640 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-06 56.6 40 67.5
Manes.09G014100 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-06 56.6 39 74.4
Manes.09G016744 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-06 56.6 38 73.7
RcHm_v2.0_Chr5g0074231 Rosa chinensis HOM05D009519 ORTHO05D010307 5.3e-06 55.8 46 54.3
Manes.09G017401 Manihot esculenta HOM05D000162 ORTHO05D000090 6.9e-06 55.5 40 70.0
Os10g0497366 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 6.9e-06 55.5 103 33.0
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 9.0e-06 55.1 47 48.9


User provided reference genes

Program Settings