Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.5e-278 962.2 479 100.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 6.6e-247 857.1 477 88.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.9e-216 753.8 478 77.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.0e-215 753.4 478 75.9
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.3e-213 744.2 478 75.5
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 8.2e-213 743.8 478 75.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.4e-207 726.5 472 74.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.8e-207 726.1 467 74.1
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-202 709.9 471 72.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.6e-200 703.0 472 72.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.1e-200 702.6 471 71.1
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.7e-200 702.2 472 71.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.6e-200 701.8 470 71.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.4e-199 699.9 464 72.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 3.9e-199 698.4 483 70.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 6.7e-199 697.6 471 71.1
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-198 695.7 472 71.4
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 2.8e-197 692.2 481 70.1
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.8e-197 691.4 470 71.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.8e-197 691.4 485 69.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.2e-197 690.6 480 71.0
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.3e-196 688.0 470 70.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.3e-196 688.0 471 70.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.5e-195 684.9 471 70.5
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.7e-195 684.1 479 68.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-194 683.3 471 70.1
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.2e-194 682.6 480 69.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.9e-194 682.2 482 69.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 3.8e-194 681.8 484 68.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.5e-194 681.0 480 70.0
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-193 680.2 474 69.6
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-193 679.9 471 69.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 9.4e-193 677.2 481 69.6
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-192 676.0 471 69.4
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 8.0e-192 674.1 466 70.4
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 5.7e-190 667.9 472 72.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.7e-190 667.9 471 69.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.4e-188 662.5 485 67.2
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.4e-188 661.4 471 67.9
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.6e-187 659.8 470 68.7
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.7e-187 659.1 469 68.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 7.7e-187 657.5 479 66.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.7e-186 656.4 483 67.9
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.7e-186 656.4 474 68.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.2e-185 651.7 494 65.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.2e-185 651.7 471 66.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 3.6e-184 648.7 481 66.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.4e-183 646.7 455 70.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.3e-183 646.0 482 64.7
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.3e-181 640.2 461 68.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.1e-180 635.6 471 67.3
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 7.0e-180 634.4 481 66.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-179 633.6 474 66.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 7.2e-177 624.4 476 66.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.0e-175 619.0 470 64.7
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.4e-174 615.5 462 66.9
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 7.5e-174 614.4 482 63.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.7e-173 613.2 486 64.4
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.3e-173 611.3 480 65.2
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.9e-171 604.7 480 61.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.0e-170 601.7 478 61.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 8.9e-167 590.9 468 60.7
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.5e-166 587.8 483 61.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.8e-166 587.4 484 61.0
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 6.4e-165 584.7 472 60.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.3e-162 576.2 466 60.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 5.6e-161 571.6 470 60.9
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 8.9e-159 564.3 481 58.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.0e-158 563.1 471 58.6
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.9e-157 559.3 477 59.7
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 6.4e-157 558.1 466 59.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 8.3e-157 557.8 471 58.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.4e-156 556.2 468 60.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.4e-156 556.2 474 62.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.1e-156 555.4 475 59.6
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.3e-154 550.4 468 58.8
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.3e-154 549.7 471 58.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.0e-154 549.3 469 60.6
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.0e-154 549.3 467 59.3
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 3.9e-154 548.9 472 57.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.9e-153 546.6 480 56.5
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 9.5e-153 544.3 471 57.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.2e-152 543.9 470 58.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.7e-152 542.0 473 60.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 4.7e-152 542.0 475 57.9
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 4.7e-152 542.0 468 56.0
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.2e-152 541.6 475 56.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.4e-151 540.4 468 59.8
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.8e-151 540.0 469 59.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-150 537.3 468 59.6
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.4e-150 535.8 478 57.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 9.9e-150 534.3 468 59.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 9.9e-150 534.3 471 56.3
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 6.4e-149 531.6 468 59.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 8.4e-149 531.2 471 59.9
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-148 530.4 468 59.4
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.4e-148 530.4 469 59.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 5.4e-148 528.5 468 59.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 9.2e-148 527.7 469 59.1
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.6e-147 526.9 471 59.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-147 526.6 468 59.6
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-146 522.7 468 58.8
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 3.3e-145 519.2 469 57.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.8e-144 516.2 469 57.4
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-143 514.2 469 56.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-143 514.2 469 56.7
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.4e-143 513.8 467 57.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.9e-142 507.7 467 57.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 9.9e-142 507.7 469 56.5
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 9.9e-142 507.7 469 56.5
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.7e-141 506.9 483 53.0
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.9e-141 505.4 473 53.5
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 8.4e-141 504.6 471 57.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.4e-140 503.8 477 56.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.4e-140 503.1 405 60.0
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.2e-140 502.3 468 57.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.4e-140 501.9 467 57.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-138 496.5 468 57.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.1e-138 495.4 468 55.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-137 494.2 475 53.1
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.1e-137 494.2 398 59.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-137 493.4 468 57.1
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 3.3e-137 492.7 476 51.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 4.3e-137 492.3 468 56.6
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 4.3e-137 492.3 468 56.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 5.6e-137 491.9 468 55.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 5.6e-137 491.9 468 55.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 5.6e-137 491.9 470 52.1
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 7.3e-137 491.5 466 54.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.1e-135 487.6 471 53.1
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.4e-135 486.5 480 51.9
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.3e-135 485.3 467 50.7
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-134 482.6 469 54.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 5.8e-134 481.9 468 54.5
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.8e-134 481.9 465 53.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 7.6e-134 481.5 456 51.1
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.2e-133 479.9 468 54.1
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.4e-132 477.2 456 53.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 7.9e-131 471.5 463 52.5
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.0e-126 456.8 473 51.8
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-126 455.7 332 67.8
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.5e-126 455.7 332 67.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 7.6e-126 454.9 434 53.5
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.1e-123 446.8 445 51.5
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.1e-123 446.8 438 52.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.3e-113 412.9 430 48.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-109 399.8 440 47.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-102 376.3 468 47.9
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.1e-95 352.8 452 41.2
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.3e-95 352.4 458 41.3
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.1e-95 351.7 500 39.0
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.9e-94 349.0 455 41.3
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 9.4e-92 341.7 354 52.3
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-90 337.4 447 40.7
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.0e-82 310.1 206 75.2
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.5e-81 307.8 325 53.8
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.4e-71 274.6 350 41.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-66 257.7 209 60.3
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 9.2e-63 245.4 203 58.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.2e-62 245.0 203 58.6
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.0e-57 227.6 163 65.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 5.4e-55 219.5 221 51.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-49 200.3 165 60.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.4e-49 199.9 325 39.7
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-34 150.2 285 38.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 7.1e-31 139.4 128 51.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.1e-22 111.3 92 60.9
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.6e-20 103.2 88 60.2
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 9.0e-18 95.9 90 56.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 7.9e-14 82.8 170 34.1
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.8e-11 73.6 95 36.8
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.4e-10 71.2 67 49.3
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 6.4e-08 63.2 34 76.5
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 3.2e-07 60.8 66 57.6
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.5e-06 57.4 91 37.4
SGA_v2.0_scaffold6G03305 Striga asiatica HOM05D037617 ORTHO05D399366 4.6e-06 57.0 40 57.5
SGA_v2.0_scaffold23G09991 Striga asiatica HOM05D037617 ORTHO05D404903 7.9e-06 56.2 40 52.5


User provided reference genes

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