Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 4.2e-150 534.6 265 100.0
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 7.2e-110 401.0 269 74.3
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 1.1e-105 387.1 299 67.6
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 1.8e-105 386.3 264 75.4
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 5.2e-100 368.2 264 69.7
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 2.0e-99 366.3 264 69.3
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 1.3e-98 363.6 265 68.7
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 1.7e-98 363.2 230 76.1
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 2.8e-98 362.5 264 67.4
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 1.1e-97 360.5 266 69.2
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 4.1e-97 358.6 264 68.6
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 1.6e-96 356.7 258 71.7
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.0e-96 356.3 264 68.2
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 3.5e-96 355.5 276 66.7
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 7.7e-96 354.4 264 67.8
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 5.0e-95 351.7 262 67.6
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 1.1e-94 350.5 264 65.9
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.5e-94 349.4 211 79.1
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 7.2e-94 347.8 292 63.7
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 7.2e-94 347.8 264 66.7
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 7.2e-94 347.8 264 66.7
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.6e-93 346.7 265 66.8
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 2.8e-93 345.9 264 66.3
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 4.7e-93 345.1 205 79.5
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 6.1e-93 344.7 264 65.5
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 6.1e-93 344.7 264 64.4
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 8.0e-93 344.4 265 65.7
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.0e-92 344.0 266 65.8
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 1.4e-92 343.6 264 64.8
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 1.8e-92 343.2 264 64.4
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.3e-92 342.8 264 65.2
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.3e-92 342.8 208 78.8
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 3.0e-92 342.4 264 66.7
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 3.0e-92 342.4 263 63.9
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 6.8e-92 341.3 263 65.4
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 8.9e-92 340.9 265 65.3
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 8.9e-92 340.9 268 63.1
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 1.2e-91 340.5 264 65.9
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 4.4e-91 338.6 263 65.0
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 4.4e-91 338.6 268 63.1
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 9.8e-91 337.4 300 59.7
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 9.8e-91 337.4 263 63.9
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 9.8e-91 337.4 263 65.0
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 1.3e-90 337.0 264 65.9
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 2.8e-90 335.9 263 64.3
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 6.3e-90 334.7 264 63.3
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 8.3e-90 334.3 264 63.3
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 8.3e-90 334.3 264 62.1
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 8.3e-90 334.3 266 64.3
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 2.4e-89 332.8 283 61.1
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 3.1e-89 332.4 271 62.7
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 5.4e-89 331.6 264 63.3
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 5.4e-89 331.6 264 63.6
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 7.0e-89 331.3 266 63.9
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 9.2e-89 330.9 266 63.9
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 1.2e-88 330.5 264 62.9
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 1.2e-88 330.5 265 63.4
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 2.7e-88 329.3 264 64.0
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 4.5e-88 328.6 262 62.6
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 1.0e-87 327.4 280 60.7
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 1.7e-87 326.6 264 64.0
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 2.3e-87 326.2 264 62.5
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 2.3e-87 326.2 264 62.5
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 3.9e-87 325.5 264 61.0
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 1.1e-86 323.9 313 55.3
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 1.9e-86 323.2 309 56.6
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 4.3e-86 322.0 264 61.4
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 5.6e-86 321.6 264 64.4
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 9.5e-86 320.9 264 65.2
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 2.1e-85 319.7 236 66.1
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 5.2e-84 315.1 267 61.8
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 1.5e-83 313.5 285 57.2
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 1.5e-83 313.5 252 63.5
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.9e-82 309.3 248 63.7
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 2.9e-82 309.3 269 58.4
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.9e-81 306.6 279 55.9
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.9e-81 306.6 279 55.9
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 5.4e-81 305.1 240 64.2
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 2.0e-80 303.1 209 69.4
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 3.5e-80 302.4 274 59.9
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 3.5e-80 302.4 267 58.8
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 3.9e-79 298.9 264 57.6
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 8.6e-79 297.7 270 57.4
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 1.1e-78 297.4 180 76.7
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 4.3e-78 295.4 188 76.6
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 4.3e-78 295.4 269 56.9
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 2.1e-77 293.1 264 56.8
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 1.4e-76 290.4 266 56.4
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 4.0e-76 288.9 220 66.8
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 1.5e-75 287.0 257 60.3
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 5.8e-75 285.0 278 56.5
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 7.5e-75 284.6 209 66.5
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 8.3e-74 281.2 188 73.9
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 3.2e-73 279.3 212 65.6
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 4.1e-73 278.9 237 60.8
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 9.2e-73 277.7 188 70.7
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 7.8e-72 274.6 188 70.2
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 8.1e-69 264.6 188 68.6
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 9.9e-67 257.7 244 58.6
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 9.9e-67 257.7 265 54.7
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 3.7e-66 255.8 213 60.1
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 4.9e-66 255.4 211 59.2
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 6.4e-66 255.0 215 59.1
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 1.1e-65 254.2 208 58.7
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 3.2e-65 252.7 211 56.9
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 3.2e-65 252.7 165 73.3
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 2.7e-64 249.6 207 58.9
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 1.1e-62 244.2 224 58.5
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 8.9e-60 234.6 208 59.6
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.9e-58 229.6 209 58.4
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 1.4e-57 227.3 208 54.3
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 2.4e-57 226.5 154 68.8
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 1.9e-54 216.9 159 66.0
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 9.9e-51 204.5 250 46.8
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 1.3e-50 204.1 181 56.9
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 1.4e-49 200.7 178 60.1
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.3e-47 193.4 177 57.6
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 4.3e-46 189.1 221 43.9
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.1e-45 186.8 191 53.9
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 3.6e-45 186.0 238 43.7
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 4.0e-44 182.6 246 40.7
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 5.3e-44 182.2 191 53.4
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 6.4e-42 175.3 188 52.1
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 2.5e-38 163.3 190 46.3
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 1.6e-37 160.6 126 65.9
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 2.6e-35 153.3 268 38.1
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 6.5e-34 148.7 141 53.2
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 1.9e-33 147.1 268 36.9
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 4.0e-28 129.4 158 49.4
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 4.3e-22 109.4 194 41.2
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 7.4e-14 82.0 61 65.6
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 1.7e-13 80.9 66 57.6
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 1.4e-12 77.8 130 38.5
CDE02G3151 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 7.7e-11 72.0 87 39.1
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 1.8e-07 60.8 106 38.7


User provided reference genes

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