Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.3e-43 176.4 85 100.0
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 9.6e-24 113.2 83 65.1
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 3.5e-18 94.7 85 60.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.6e-18 94.4 79 60.8
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.3e-16 88.2 112 45.5
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 3.3e-16 88.2 84 56.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.3e-15 86.3 85 51.8
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.8e-15 84.3 82 51.2
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 3.1e-14 81.6 82 50.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 3.1e-14 81.6 82 50.0
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 5.3e-14 80.9 83 47.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 9.0e-14 80.1 82 50.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-13 79.7 71 52.1
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.5e-13 79.3 83 51.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.0e-13 79.0 79 49.4
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.6e-13 78.6 85 47.1
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 5.9e-13 77.4 85 44.7
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 7.7e-13 77.0 82 48.8
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 7.7e-13 77.0 87 50.6
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.3e-12 76.3 72 51.4
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.3e-12 76.3 72 51.4
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.3e-12 76.3 85 44.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.3e-12 76.3 85 43.5
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-12 75.9 86 51.2
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.0e-12 74.3 84 40.5
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 6.5e-12 73.9 54 57.4
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.5e-12 73.9 53 56.6
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 6.5e-12 73.9 77 49.4
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 6.5e-12 73.9 75 48.0
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.5e-12 73.9 79 44.3
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 6.5e-12 73.9 82 46.3
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 8.5e-12 73.6 82 41.5
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.4e-11 72.8 85 47.1
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.4e-11 72.8 73 47.9
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.4e-11 72.8 87 40.2
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.4e-11 72.8 53 54.7
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-11 72.8 76 46.1
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.4e-11 72.8 76 46.1
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.9e-11 72.4 75 46.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.2e-11 71.2 72 47.2
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.5e-11 70.9 53 56.6
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.5e-11 70.9 76 50.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.5e-11 70.9 53 52.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.5e-11 70.9 76 44.7
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.5e-11 70.9 76 44.7
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.5e-11 70.9 76 44.7
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.2e-11 70.5 83 43.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 7.2e-11 70.5 53 52.8
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 7.2e-11 70.5 73 41.1
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.2e-11 70.5 75 48.0
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.2e-10 69.7 76 48.7
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-10 69.7 85 41.2
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 1.2e-10 69.7 74 51.4
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.6e-10 69.3 75 44.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.6e-10 69.3 75 45.3
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.1e-10 68.9 58 58.6
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.1e-10 68.9 78 48.7
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.1e-10 68.9 74 43.2
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.1e-10 68.9 74 41.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.7e-10 68.6 78 47.4
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.6e-10 68.2 72 45.8
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.6e-10 68.2 73 46.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.6e-10 67.8 73 43.8
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.1e-10 67.4 54 50.0
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 6.1e-10 67.4 54 50.0
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 6.1e-10 67.4 82 41.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.9e-10 67.0 78 48.7
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 7.9e-10 67.0 75 41.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.4e-09 66.2 77 46.8
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.4e-09 66.2 77 46.8
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.8e-09 65.9 51 54.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.3e-09 65.5 82 42.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.0e-09 65.1 78 44.9
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 5.1e-09 64.3 55 45.5
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 5.1e-09 64.3 76 39.5
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 5.1e-09 64.3 79 46.8
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.7e-09 63.9 73 45.2
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 6.7e-09 63.9 73 45.2
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.7e-09 63.9 76 46.1
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.7e-09 63.9 57 45.6
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 6.7e-09 63.9 75 42.7
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.1e-08 63.2 51 49.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-08 62.8 48 60.4
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.9e-08 62.4 54 55.6
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.9e-08 62.4 48 62.5
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.9e-08 62.4 85 41.2
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.3e-08 61.6 57 43.9
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.3e-08 61.6 73 41.1
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.3e-08 61.6 54 51.9
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.3e-08 61.2 49 59.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 5.7e-08 60.8 38 57.9
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.7e-08 60.8 52 51.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 7.4e-08 60.5 98 33.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 7.4e-08 60.5 77 42.9
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.3e-07 59.7 77 42.9
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.3e-07 59.7 76 40.8
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-07 59.7 46 47.8
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.7e-07 59.3 40 57.5
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 2.2e-07 58.9 85 34.1
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 2.2e-07 58.9 85 34.1
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.8e-07 58.5 84 38.1
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 2.8e-07 58.5 40 55.0
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 4.8e-07 57.8 75 40.0
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 4.8e-07 57.8 39 56.4
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.1e-06 56.6 55 38.2
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.4e-06 56.2 51 49.0
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.4e-06 56.2 41 58.5
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.8e-06 55.8 83 34.9
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.1e-06 54.7 37 54.1
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 5.3e-06 54.3 75 44.0
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 6.9e-06 53.9 38 55.3


User provided reference genes

Program Settings