Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.1e-122 441.8 226 100.0
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.3e-103 378.3 227 85.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.3e-101 372.5 211 87.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.4e-100 368.6 227 82.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.4e-100 368.6 226 82.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.2e-99 365.9 227 83.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.4e-98 361.3 209 84.2
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 9.2e-98 360.5 233 78.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.2e-97 360.1 232 79.7
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.1e-97 359.4 223 79.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.1e-96 354.8 230 79.6
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.5e-95 353.2 224 78.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 7.3e-95 350.9 236 77.5
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.6e-94 348.6 225 76.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.7e-94 348.2 222 78.4
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 8.1e-94 347.4 224 77.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.4e-93 346.7 233 79.0
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-93 346.7 233 79.0
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-93 346.7 222 77.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.4e-93 346.7 222 77.9
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.0e-93 345.1 211 82.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.0e-93 345.1 233 78.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.0e-93 345.1 233 78.5
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 6.8e-93 344.4 216 78.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.8e-93 344.4 233 78.5
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.2e-92 343.6 233 78.1
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.0e-92 342.8 227 76.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.0e-92 342.8 228 78.9
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.4e-92 341.7 204 82.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 5.8e-92 341.3 227 78.0
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 9.9e-92 340.5 213 79.3
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 8.3e-91 337.4 235 73.2
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.1e-90 337.0 229 76.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-90 336.7 212 79.2
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.4e-90 336.7 212 78.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-90 336.3 214 77.6
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.9e-90 336.3 210 80.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-90 336.3 213 78.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.4e-90 335.9 222 75.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.4e-90 334.7 200 81.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-89 333.6 231 77.1
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.6e-89 333.2 213 77.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-89 332.8 233 76.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-89 332.8 233 76.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.5e-89 332.0 229 74.2
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.0e-89 331.3 231 73.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.0e-88 330.5 210 78.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.3e-88 330.1 230 76.5
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-88 330.1 214 75.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.3e-88 329.3 213 76.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-87 326.6 215 75.3
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.6e-86 323.2 211 78.2
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.6e-86 323.2 211 78.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.1e-86 322.8 211 76.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.8e-86 322.4 232 73.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 3.6e-86 322.0 230 74.8
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.6e-86 322.0 223 73.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.7e-86 321.6 213 74.2
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.4e-85 320.1 231 72.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.8e-85 319.7 212 75.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.4e-85 319.3 234 72.2
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.2e-85 318.2 209 75.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 5.2e-85 318.2 230 70.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.2e-84 317.0 230 71.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.5e-84 316.6 229 70.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.0e-84 316.2 230 73.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 3.4e-84 315.5 233 70.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.8e-84 314.7 209 73.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.7e-83 313.2 213 73.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.8e-83 312.0 205 76.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.4e-82 308.1 207 74.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.4e-82 308.1 226 71.2
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 9.3e-82 307.4 231 70.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 9.3e-82 307.4 209 75.6
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.1e-81 306.2 234 69.2
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.1e-81 306.2 224 70.1
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 7.8e-81 304.3 203 76.8
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 7.8e-81 304.3 224 69.6
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.3e-80 303.5 200 76.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-80 303.5 227 70.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.6e-80 301.2 224 67.9
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.1e-79 300.4 220 70.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.1e-78 296.2 226 68.1
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.8e-78 295.8 203 70.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.8e-78 295.0 196 74.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.6e-76 289.3 203 71.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 7.6e-76 287.7 225 64.4
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.9e-75 285.8 208 70.2
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.8e-75 285.4 230 64.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.4e-75 284.3 211 67.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-74 283.9 225 67.6
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 5.4e-74 281.6 210 70.5
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-73 279.6 210 69.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-73 279.6 210 69.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.1e-73 279.6 210 69.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 6.0e-73 278.1 210 69.0
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.0e-72 277.3 230 65.2
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-72 276.9 232 65.1
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.3e-72 276.9 232 65.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.3e-72 276.2 225 63.6
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 5.1e-72 275.0 232 64.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 8.7e-72 274.2 232 64.2
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 8.7e-72 274.2 232 64.2
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.7e-72 274.2 231 65.4
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.5e-71 273.5 232 65.1
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.5e-71 273.5 228 67.5
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.5e-71 273.5 222 67.6
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.9e-71 273.1 232 64.2
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.9e-71 273.1 207 69.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 5.6e-71 271.6 222 67.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 9.6e-71 270.8 233 64.4
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.6e-70 270.0 232 64.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.8e-70 269.2 232 64.7
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-70 269.2 232 64.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.6e-70 268.9 220 63.6
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 8.1e-70 267.7 220 63.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 6.9e-69 264.6 203 65.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.2e-68 263.8 228 63.6
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.8e-67 258.8 196 69.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.8e-67 258.8 218 60.6
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.4e-66 256.9 220 60.9
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-66 256.9 193 66.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.2e-66 255.4 197 67.0
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.1e-65 253.1 215 64.7
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-62 243.0 222 59.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.8e-62 242.7 142 81.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.7e-56 221.5 200 62.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 2.5e-55 219.5 192 64.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.4e-53 213.8 218 56.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.4e-53 213.8 208 52.4
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.5e-52 208.8 168 63.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 4.2e-50 202.2 120 83.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.6e-44 183.0 120 70.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.3e-43 180.6 205 52.2
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 9.4e-42 174.5 139 64.7
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.2e-41 174.1 108 74.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.1e-39 167.5 101 79.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.5e-39 167.2 104 79.8
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.0e-19 99.0 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.2e-17 94.4 60 73.3
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.1e-09 65.5 195 26.7
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 4.0e-08 62.8 175 26.3


User provided reference genes

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