Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 1.3e-74 283.5 198 100.0
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 1.4e-70 270.0 196 97.4
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 3.2e-70 268.9 197 98.0
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 9.3e-70 267.3 197 98.0
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 2.7e-69 265.8 197 96.4
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 4.6e-69 265.0 196 96.4
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 2.3e-68 262.7 206 87.4
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 6.7e-68 261.2 196 96.4
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 1.8e-57 226.5 124 95.2
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 2.7e-53 212.6 200 83.5
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.2e-45 187.2 127 80.3
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 6.7e-44 181.4 125 77.6
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 6.7e-44 181.4 126 74.6
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 8.8e-44 181.0 125 75.2
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 8.8e-44 181.0 125 76.0
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 1.5e-43 180.3 127 77.2
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 2.0e-43 179.9 126 74.6
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.5e-43 179.5 125 75.2
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 4.3e-43 178.7 125 74.4
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 4.3e-43 178.7 125 74.4
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 9.7e-43 177.6 123 74.0
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 9.7e-43 177.6 125 75.2
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 1.7e-42 176.8 125 74.4
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.8e-42 176.0 123 75.6
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 8.2e-42 174.5 123 72.4
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 1.4e-41 173.7 127 73.2
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 3.1e-41 172.6 125 74.4
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 5.3e-41 171.8 123 73.2
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.3e-41 171.8 123 73.2
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 1.2e-40 170.6 126 72.2
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.7e-39 166.8 126 67.5
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 1.7e-39 166.8 125 70.4
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 2.2e-39 166.4 125 71.2
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 2.9e-39 166.0 125 70.4
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 2.9e-39 166.0 125 70.4
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 6.5e-39 164.9 125 71.2
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 6.5e-39 164.9 125 71.2
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 1.4e-38 163.7 123 71.5
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 7.2e-38 161.4 123 69.9
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 7.2e-38 161.4 125 68.8
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 1.2e-37 160.6 125 69.6
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.1e-37 159.8 125 66.4
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.1e-37 159.8 125 66.4
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 2.1e-37 159.8 125 66.4
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 4.7e-37 158.7 126 68.3
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 6.1e-37 158.3 123 67.5
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 7.9e-37 157.9 125 67.2
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.4e-36 157.1 125 67.2
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.4e-36 157.1 125 67.2
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 1.8e-36 156.8 126 68.3
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 1.8e-36 156.8 125 67.2
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 2.3e-36 156.4 124 69.4
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 3.0e-36 156.0 123 66.7
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 3.0e-36 156.0 125 64.0
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 5.1e-36 155.2 124 68.5
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 5.1e-36 155.2 126 65.9
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 1.5e-35 153.7 124 68.5
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.0e-35 153.3 122 65.6
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 3.3e-35 152.5 195 63.1
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 3.3e-35 152.5 122 66.4
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 4.4e-35 152.1 127 66.1
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 4.4e-35 152.1 125 67.2
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 4.4e-35 152.1 126 67.5
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 5.7e-35 151.8 126 61.1
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 9.7e-35 151.0 143 65.0
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 9.7e-35 151.0 126 63.5
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 1.7e-34 150.2 125 60.8
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 1.7e-34 150.2 125 63.2
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 2.8e-34 149.4 125 62.4
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 6.3e-34 148.3 123 62.6
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 6.3e-34 148.3 125 61.6
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 6.3e-34 148.3 126 61.1
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 6.3e-34 148.3 140 65.7
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 1.1e-33 147.5 129 60.5
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 1.4e-33 147.1 128 60.9
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 1.4e-33 147.1 128 60.9
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 1.4e-33 147.1 128 60.9
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.8e-33 146.7 125 61.6
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 2.4e-33 146.4 140 63.6
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 2.4e-33 146.4 140 63.6
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 3.1e-33 146.0 123 62.6
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 3.1e-33 146.0 123 62.6
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 3.1e-33 146.0 123 62.6
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 3.1e-33 146.0 123 62.6
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 3.1e-33 146.0 126 61.1
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 3.1e-33 146.0 126 59.5
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 5.3e-33 145.2 122 62.3
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 5.3e-33 145.2 126 58.7
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 5.3e-33 145.2 123 63.4
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 7.0e-33 144.8 126 60.3
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 1.2e-32 144.1 125 61.6
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.0e-32 143.3 125 62.4
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 2.0e-32 143.3 126 59.5
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 2.0e-32 143.3 125 62.4
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 3.5e-32 142.5 140 57.9
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 3.5e-32 142.5 125 59.2
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 3.5e-32 142.5 126 58.7
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 7.7e-32 141.4 125 64.0
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 7.7e-32 141.4 123 61.8
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 1.0e-31 141.0 123 64.2
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.0e-31 141.0 123 64.2
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 1.3e-31 140.6 125 60.8
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.3e-31 140.6 140 63.6
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.3e-31 140.6 126 57.1
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.3e-31 140.6 126 57.9
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 1.3e-31 140.6 126 57.9
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 2.2e-31 139.8 125 56.0
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 2.2e-31 139.8 123 60.2
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.9e-31 139.4 125 57.6
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 3.8e-31 139.0 124 58.1
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 6.5e-31 138.3 123 57.7
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 6.5e-31 138.3 125 56.8
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 6.5e-31 138.3 125 56.8
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 8.5e-31 137.9 123 59.3
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 1.1e-30 137.5 123 56.9
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 1.5e-30 137.1 123 61.0
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 1.5e-30 137.1 125 56.8
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.5e-30 136.3 126 56.3
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 2.5e-30 136.3 126 55.6
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 3.2e-30 136.0 125 57.6
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 4.2e-30 135.6 127 57.5
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 2.1e-29 133.3 123 58.5
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 2.7e-29 132.9 92 75.0
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.6e-29 132.5 125 54.4
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.1e-27 127.5 140 49.3
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 1.1e-27 127.5 140 47.1
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 3.3e-27 125.9 99 68.7
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 3.3e-27 125.9 123 54.5
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 4.4e-27 125.6 121 53.7
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 1.7e-26 123.6 138 52.2
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 1.7e-26 123.6 138 52.2
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.7e-26 123.6 126 52.4
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 4.1e-25 119.0 129 50.4
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 5.3e-25 118.6 123 52.8
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 2.0e-24 116.7 123 51.2
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 3.5e-24 115.9 126 49.2
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 5.9e-24 115.2 85 64.7
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 4.2e-22 109.0 72 70.8
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 9.4e-22 107.8 125 47.2
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 1.2e-21 107.5 126 43.7
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 5.7e-19 98.6 119 43.7
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 5.7e-19 98.6 114 55.3
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 5.7e-19 98.6 72 65.3
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 1.3e-18 97.4 72 63.9
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 1.3e-18 97.4 126 42.1
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 1.1e-17 94.4 123 41.5
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 2.0e-16 90.1 122 39.3
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 2.9e-15 86.3 72 55.6
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 5.0e-15 85.5 125 43.2
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 7.2e-14 81.6 125 40.8
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 7.2e-14 81.6 125 40.8
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 6.8e-12 75.1 50 70.0
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 5.7e-11 72.0 124 33.1
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 9.8e-11 71.2 50 64.0
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 1.7e-10 70.5 50 62.0
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 8.3e-10 68.2 126 32.5
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 9.2e-09 64.7 99 33.3
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 9.2e-09 64.7 111 36.0
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 1.2e-08 64.3 98 38.8
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 1.6e-08 63.9 97 39.2
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 3.5e-08 62.8 115 33.9
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 5.9e-08 62.0 125 31.2
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 7.7e-08 61.6 121 30.6
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.0e-07 61.2 97 35.1
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.7e-07 60.5 113 33.6
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 2.3e-07 60.1 126 33.3
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 2.3e-07 60.1 125 32.8
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 2.9e-07 59.7 123 34.1
MD15G1282800 Malus domestica HOM05D003357 ORTHO05D003779 2.9e-07 59.7 50 58.0
Nitab4.5_0015287g0010 Nicotiana tabacum HOM05D003357 ORTHO05D003779 6.6e-07 58.5 126 30.2
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 8.6e-07 58.2 126 33.3
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 1.5e-06 57.4 105 34.3
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.5e-06 56.6 97 34.0
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.5e-06 56.6 97 34.0
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.5e-06 56.6 97 34.0
Nn1g08556 Nelumbo nucifera HOM05D003357 ORTHO05D003779 7.3e-06 55.1 80 45.0


User provided reference genes

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