Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 1.5e-26 122.1 60 100.0
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 4.3e-18 94.0 54 79.6
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 7.3e-18 93.2 53 81.1
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 1.2e-17 92.4 51 82.4
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 1.6e-17 92.0 50 82.0
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 4.7e-17 90.5 51 80.4
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 8.1e-17 89.7 52 76.9
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 1.4e-16 89.0 49 81.6
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 1.4e-16 89.0 50 78.0
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.8e-16 88.6 59 67.8
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 1.8e-16 88.6 59 67.8
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.1e-16 87.8 59 67.8
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 6.8e-16 86.7 53 79.2
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 6.8e-16 86.7 55 70.9
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 6.8e-16 86.7 51 76.5
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 8.9e-16 86.3 49 79.6
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 8.9e-16 86.3 48 79.2
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 1.2e-15 85.9 47 80.9
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.2e-15 85.9 52 71.2
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 1.5e-15 85.5 52 75.0
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.5e-15 85.5 56 69.6
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 2.0e-15 85.1 53 73.6
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.6e-15 84.7 53 71.7
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.6e-15 84.7 53 71.7
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 3.4e-15 84.3 60 65.0
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 4.4e-15 84.0 51 74.5
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 5.8e-15 83.6 54 70.4
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 7.5e-15 83.2 54 68.5
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 7.5e-15 83.2 55 70.9
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 9.8e-15 82.8 41 87.8
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 1.3e-14 82.4 54 72.2
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 1.7e-14 82.0 54 74.1
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 1.7e-14 82.0 53 66.0
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 2.9e-14 81.3 51 68.6
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 2.9e-14 81.3 52 75.0
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 4.9e-14 80.5 39 92.3
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 4.9e-14 80.5 42 83.3
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 8.3e-14 79.7 41 82.9
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 1.1e-13 79.3 51 64.7
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 1.1e-13 79.3 46 76.1
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 70.2
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 70.2
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 70.2
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 70.2
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 1.9e-13 78.6 47 70.2
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 4.1e-13 77.4 57 66.7
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 5.4e-13 77.0 49 69.4
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 5.4e-13 77.0 54 64.8
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 7.1e-13 76.6 59 61.0
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 1.2e-12 75.9 45 68.9
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 1.6e-12 75.5 53 62.3
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 1.6e-12 75.5 58 63.8
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 2.1e-12 75.1 42 78.6
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 2.7e-12 74.7 45 66.7
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 2.7e-12 74.7 45 66.7
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 2.7e-12 74.7 56 64.3
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 2.7e-12 74.7 46 69.6
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 4.6e-12 73.9 45 66.7
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 7.8e-12 73.2 53 60.4
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 2.3e-11 71.6 46 63.0
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 6.6e-11 70.1 66 53.0
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 6.6e-11 70.1 51 56.9
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 1.5e-10 68.9 42 71.4
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 1.1e-08 62.8 54 57.4
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 8.9e-08 59.7 79 40.5
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 1.3e-06 55.8 38 60.5


User provided reference genes

Program Settings