Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 3.5e-112 408.3 206 100.0
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 3.7e-77 292.0 176 87.5
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.4e-76 289.3 178 85.4
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.4e-60 236.1 158 73.4
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 4.1e-60 235.3 170 71.2
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 3.8e-58 228.8 169 71.0
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 8.5e-58 227.6 156 73.1
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.1e-57 227.3 179 67.0
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 9.4e-57 224.2 157 68.8
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.7e-56 222.6 158 70.3
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 6.1e-56 221.5 168 63.7
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 7.9e-56 221.1 158 69.6
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.0e-55 220.7 169 66.3
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.0e-55 220.7 156 69.9
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.4e-55 220.3 158 69.6
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.3e-55 219.5 157 68.2
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.3e-55 219.5 156 69.9
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 3.0e-55 219.2 157 67.5
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.0e-55 219.2 157 68.8
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 3.9e-55 218.8 162 67.9
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 3.9e-55 218.8 167 67.1
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 5.2e-55 218.4 158 69.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 5.2e-55 218.4 162 66.0
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 6.7e-55 218.0 156 69.9
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 8.8e-55 217.6 155 71.0
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 8.8e-55 217.6 155 71.0
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.1e-54 217.2 155 69.7
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.1e-54 217.2 158 69.0
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.1e-54 217.2 158 70.3
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-54 216.5 157 67.5
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 2.6e-54 216.1 166 66.3
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.3e-54 215.7 156 67.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 3.3e-54 215.7 156 67.9
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.3e-54 215.7 167 64.7
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.3e-54 215.7 157 68.2
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 4.4e-54 215.3 158 68.4
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 5.7e-54 214.9 155 68.4
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 5.7e-54 214.9 156 69.2
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.7e-54 214.2 158 67.7
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.7e-53 213.4 158 67.7
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.7e-53 213.4 157 66.9
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.7e-53 213.4 198 59.6
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 2.2e-53 213.0 156 67.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 2.2e-53 213.0 157 65.6
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 2.2e-53 213.0 157 66.9
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 2.2e-53 213.0 166 62.0
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.2e-53 213.0 157 66.2
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 2.8e-53 212.6 175 61.1
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 2.8e-53 212.6 162 64.8
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 4.8e-53 211.8 161 65.2
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 4.8e-53 211.8 161 65.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 4.8e-53 211.8 155 65.8
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.8e-53 211.8 158 68.4
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.8e-53 211.8 158 68.4
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 4.8e-53 211.8 156 67.9
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 6.3e-53 211.5 156 67.3
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 8.2e-53 211.1 175 62.9
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.4e-52 210.3 156 67.3
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.4e-52 210.3 167 64.1
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.8e-52 209.9 167 62.9
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.8e-52 209.9 157 63.7
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 1.8e-52 209.9 169 61.5
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 3.1e-52 209.1 163 64.4
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 4.1e-52 208.8 156 67.3
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 5.3e-52 208.4 169 63.3
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 7.0e-52 208.0 155 63.9
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 9.1e-52 207.6 162 61.1
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 9.1e-52 207.6 165 64.8
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.2e-51 207.2 156 65.4
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.2e-51 207.2 156 66.0
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.0e-51 206.5 156 66.7
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.6e-51 206.1 192 57.8
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 3.5e-51 205.7 156 66.0
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 7.7e-51 204.5 158 66.5
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 7.7e-51 204.5 158 62.0
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 7.7e-51 204.5 166 62.7
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 7.7e-51 204.5 176 62.5
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 7.7e-51 204.5 159 64.8
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.0e-50 204.1 156 64.7
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 2.9e-50 202.6 177 59.9
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.9e-50 202.6 157 64.3
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.1e-49 200.7 157 62.4
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.9e-49 199.9 157 64.3
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 2.5e-49 199.5 182 57.7
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.5e-49 199.5 192 55.7
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.2e-49 199.1 158 65.2
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 9.4e-49 197.6 157 61.8
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.2e-48 197.2 148 64.9
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.2e-48 197.2 157 62.4
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.1e-48 196.4 158 63.3
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.8e-47 193.4 201 52.2
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.5e-46 190.3 156 61.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 5.3e-44 181.8 238 44.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 9.1e-44 181.0 137 65.0
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.6e-43 180.3 163 57.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 2.7e-43 179.5 155 60.0
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 5.9e-43 178.3 161 53.4
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 3.8e-42 175.6 160 60.6
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.1e-41 174.1 156 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.5e-41 173.7 153 54.9
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.3e-37 157.9 157 51.6
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 3.1e-36 156.0 160 51.2
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 5.0e-34 148.7 147 55.1
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.6e-32 143.7 162 48.8
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.3e-31 139.8 119 59.7
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.1e-28 129.4 95 65.3
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.6e-27 127.1 95 64.2
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.0e-26 124.4 104 58.7
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.8e-26 122.5 95 61.1
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 5.0e-26 122.1 154 42.9
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.5e-25 120.6 159 41.5
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.5e-25 120.6 148 41.2
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.6e-24 117.1 147 42.9
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 6.8e-23 111.7 163 38.7
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.3e-18 97.4 65 73.8
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 8.6e-18 94.7 75 69.3
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.1e-16 90.1 120 37.5
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.4e-15 87.4 178 33.1
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.2e-14 84.3 73 61.6
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.2e-13 80.1 126 38.9
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.6e-11 73.9 56 62.5
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 7.8e-11 71.6 52 65.4
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 5.0e-10 68.9 52 59.6
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.5e-09 67.4 52 57.7
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.9e-09 67.0 52 57.7
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 3.3e-09 66.2 45 71.1
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-06 57.4 52 59.6
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 2.6e-06 56.6 37 70.3


User provided reference genes

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