Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.6e-169 598.2 310 100.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 6.4e-142 507.7 310 83.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.4e-141 504.6 310 82.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.3e-139 500.0 310 80.6
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.1e-137 492.7 310 79.7
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.2e-136 488.0 310 80.3
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.2e-136 488.0 310 79.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-135 484.6 345 75.7
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-134 483.4 310 79.4
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.9e-134 482.3 304 78.9
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.4e-133 479.9 310 79.7
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.2e-133 478.8 310 77.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 5.4e-133 478.0 308 79.9
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 7.1e-133 477.6 311 79.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.7e-131 473.0 310 76.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.0e-131 472.2 309 76.1
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 6.6e-131 471.1 310 76.8
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 8.7e-131 470.7 310 76.1
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.7e-131 470.7 302 78.1
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-130 469.2 310 76.8
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-130 469.2 299 78.3
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-130 469.2 310 76.8
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 3.3e-130 468.8 300 79.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.3e-130 468.8 299 78.3
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.3e-130 468.8 302 77.5
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.6e-130 467.2 299 77.9
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 9.6e-130 467.2 310 77.1
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.6e-129 466.5 302 79.1
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.6e-129 466.5 310 76.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.1e-129 466.1 310 75.2
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.8e-129 465.7 310 75.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.8e-129 464.9 311 78.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.8e-129 464.9 341 73.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-128 463.8 310 75.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.0e-128 461.8 310 74.5
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 6.9e-128 461.1 313 75.4
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.9e-128 461.1 313 75.1
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.5e-127 459.9 313 74.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-127 459.9 313 74.8
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.5e-127 459.9 313 75.1
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.0e-127 459.5 310 74.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.4e-127 458.8 310 75.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 7.6e-127 457.6 310 75.2
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.9e-127 457.2 304 77.0
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.9e-127 457.2 310 74.2
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 9.9e-127 457.2 310 75.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 9.9e-127 457.2 310 72.9
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.8e-126 455.3 310 75.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.1e-125 453.8 302 77.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.2e-124 450.3 310 74.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.1e-124 449.5 298 76.5
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.7e-124 449.1 310 74.8
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 4.6e-124 448.4 298 75.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 4.6e-124 448.4 310 75.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.9e-124 447.6 312 75.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-123 446.4 313 73.5
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.3e-123 446.0 310 71.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.0e-123 445.7 298 75.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.0e-123 445.7 298 75.8
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 8.7e-123 444.1 385 62.6
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.5e-122 443.4 306 73.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.5e-122 443.4 312 73.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.6e-122 441.4 347 67.1
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.4e-122 441.0 313 72.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 9.6e-122 440.7 301 74.1
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.1e-121 439.5 312 71.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 313 71.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.8e-121 439.1 306 74.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 8.1e-121 437.6 310 72.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.1e-120 437.2 313 71.2
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.1e-120 437.2 311 72.0
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.4e-120 436.8 310 71.6
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.8e-120 436.4 297 75.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.4e-120 436.0 310 71.3
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 4.0e-120 435.3 312 71.8
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 6.9e-120 434.5 310 70.6
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.2e-119 433.7 303 71.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.0e-119 433.0 310 71.3
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.4e-119 432.2 275 77.1
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 4.5e-119 431.8 310 70.6
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 4.5e-119 431.8 312 70.2
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 5.8e-119 431.4 297 72.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 9.9e-119 430.6 310 71.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.7e-118 429.9 310 71.0
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.7e-118 429.9 319 70.2
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.2e-118 429.5 311 71.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.8e-118 428.7 310 70.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.9e-118 428.3 310 70.6
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.9e-118 428.3 315 70.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 8.4e-118 427.6 310 70.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.4e-118 427.6 303 71.9
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.4e-118 427.6 307 71.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 8.4e-118 427.6 298 73.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.4e-117 426.8 310 70.0
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.9e-117 426.4 351 64.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 5.5e-117 424.9 286 72.4
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 7.1e-117 424.5 310 69.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.3e-117 424.1 260 81.2
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 9.3e-117 424.1 315 69.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-116 423.7 310 70.3
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.5e-116 422.2 297 73.7
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.5e-116 422.2 297 71.0
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.6e-116 421.8 310 69.7
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 6.0e-116 421.4 297 73.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.0e-116 421.4 290 73.8
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.8e-115 419.9 306 69.6
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.8e-115 419.9 286 72.0
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 6.7e-115 417.9 316 68.4
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 3.3e-114 415.6 309 67.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 9.6e-114 414.1 305 69.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.3e-113 413.7 348 63.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.4e-112 409.5 315 68.3
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.0e-112 408.7 263 76.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.6e-111 406.0 309 67.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.7e-110 403.3 274 73.7
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-109 400.2 315 66.7
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.9e-109 399.8 307 68.7
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.1e-108 396.4 312 65.4
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.0e-108 394.8 275 69.8
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-106 390.6 258 74.4
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.9e-106 389.8 312 62.5
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 9.0e-104 380.9 300 66.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.2e-103 380.6 305 62.0
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.7e-102 376.7 313 62.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.2e-101 372.5 287 66.2
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 7.2e-101 371.3 310 62.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.1e-100 369.8 301 62.5
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.0e-99 365.9 229 76.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 8.5e-94 347.8 276 62.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.0e-90 336.7 230 73.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.8e-89 332.0 271 64.9
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.7e-84 315.5 290 54.8
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.5e-82 310.5 299 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.0e-82 310.1 289 54.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-81 307.4 295 55.9
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.7e-78 297.0 280 57.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.5e-78 294.7 280 53.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.5e-77 292.0 301 53.2
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.2e-77 291.6 273 54.2
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 6.7e-75 285.0 289 49.8
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.5e-74 283.9 289 49.5
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.4e-72 276.6 297 54.5
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 4.5e-71 272.3 249 58.6
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.2e-69 266.2 204 65.7
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 8.3e-65 251.5 196 68.4
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-64 251.1 327 48.6
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-64 250.0 231 54.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.1e-60 235.3 181 64.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-59 233.8 215 60.5
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.4e-58 229.6 221 51.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.7e-57 227.3 148 73.0
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-54 216.9 184 62.0
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 8.6e-54 214.9 150 72.7
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 5.6e-53 212.2 214 50.9
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.0e-48 195.3 152 67.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.0e-47 193.7 285 39.6
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.2e-34 151.4 317 32.8
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 6.6e-30 135.6 105 65.7
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 5.6e-29 132.5 312 28.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.2e-24 116.7 278 30.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.2e-23 114.8 114 50.9
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 3.5e-23 113.2 300 28.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.3e-22 110.5 78 71.8
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-21 108.2 124 49.2
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.8e-19 100.9 299 29.1
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-14 84.3 184 37.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 5.8e-10 69.3 55 56.4
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 6.4e-09 65.9 45 71.1


User provided reference genes

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