Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 5.5e-56 220.7 109 100.0
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 4.7e-23 111.3 90 64.4
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 4.4e-21 104.8 125 54.4
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 2.0e-13 79.3 93 43.0
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 3.4e-13 78.6 126 42.1
Manes.10G047933 Manihot esculenta HOM05D007556 ORTHO05D002252 1.3e-12 76.6 99 44.4
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 1.7e-12 76.3 93 49.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.2e-12 75.9 107 41.1
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 3.7e-12 75.1 102 41.2
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.4e-11 73.2 89 46.1
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 3.2e-11 72.0 115 39.1
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 3.2e-11 72.0 105 44.8
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 5.4e-11 71.2 88 45.5
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.2e-10 70.1 84 46.4
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.2e-10 70.1 89 44.9
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 2.0e-10 69.3 84 41.7
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 2.7e-10 68.9 77 45.5
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.7e-10 68.9 101 39.6
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.5e-10 68.6 90 42.2
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 3.5e-10 68.6 75 49.3
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.6e-10 68.2 90 44.4
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 6.0e-10 67.8 94 36.2
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.8e-10 67.4 86 46.5
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-09 67.0 79 48.1
Psat5g006440 Pisum sativum HOM05D010359 ORTHO05D002252 1.0e-09 67.0 88 44.3
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.3e-09 66.6 102 37.3
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.7e-09 66.2 92 41.3
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.7e-09 66.2 90 40.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.3e-09 65.9 105 40.0
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 3.0e-09 65.5 76 47.4
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.9e-09 65.1 80 46.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 5.0e-09 64.7 101 34.7
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 5.0e-09 64.7 107 32.7
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 8.6e-09 63.9 99 40.4
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 8.6e-09 63.9 121 37.2
SGA_v2.0_scaffold55G19792 Striga asiatica HOM05D007556 ORTHO05D002252 8.6e-09 63.9 96 36.5
Sc18g0004570 Simmondsia chinensis HOM05D013587 ORTHO05D002252 1.1e-08 63.5 98 40.8
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.5e-08 63.2 94 35.1
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 1.5e-08 63.2 61 52.5
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.9e-08 62.8 93 38.7
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.5e-08 62.4 74 48.6
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 2.5e-08 62.4 78 43.6
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 3.3e-08 62.0 124 36.3
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 3.3e-08 62.0 84 40.5
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.3e-08 62.0 112 40.2
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.3e-08 61.6 83 39.8
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 5.6e-08 61.2 115 33.9
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 5.6e-08 61.2 117 37.6
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 7.3e-08 60.8 92 35.9
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 7.3e-08 60.8 83 41.0
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.3e-08 60.8 83 41.0
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 7.3e-08 60.8 98 35.7
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 7.3e-08 60.8 98 35.7
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 9.5e-08 60.5 107 32.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.5e-08 60.5 83 39.8
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 1.2e-07 60.1 114 35.1
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 1.6e-07 59.7 123 35.0
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.6e-07 59.7 70 45.7
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.1e-07 59.3 119 37.0
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 2.1e-07 59.3 105 35.2
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 2.1e-07 59.3 85 38.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 2.1e-07 59.3 76 40.8
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 2.1e-07 59.3 91 36.3
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 2.1e-07 59.3 83 41.0
Glyma.11G119000 Glycine max HOM05D010359 ORTHO05D002252 3.6e-07 58.5 94 35.1
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 3.6e-07 58.5 70 45.7
Aqoxy2G01755 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 4.7e-07 58.2 95 37.9
Lj3g0003579 Lotus japonicus HOM05D010359 ORTHO05D002252 4.7e-07 58.2 101 36.6
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.7e-07 58.2 87 39.1
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 6.2e-07 57.8 97 35.1
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 6.2e-07 57.8 82 36.6
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 6.2e-07 57.8 95 33.7
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 8.0e-07 57.4 93 36.6
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 8.0e-07 57.4 82 46.3
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 8.0e-07 57.4 93 32.3
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 8.0e-07 57.4 90 37.8
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 1.1e-06 57.0 99 36.4
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.1e-06 57.0 75 34.7
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.1e-06 57.0 73 41.1
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.1e-06 57.0 92 38.0
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.1e-06 57.0 90 37.8
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.1e-06 57.0 88 35.2
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 1.4e-06 56.6 115 33.9
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.4e-06 56.6 94 36.2
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.4e-06 56.6 89 40.4
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.4e-06 56.6 78 42.3
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.8e-06 56.2 89 37.1
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.8e-06 56.2 81 44.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.8e-06 56.2 77 44.2
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.8e-06 56.2 100 32.0
TPR.G38150 Trifolium pratense HOM05D010359 ORTHO05D002252 1.8e-06 56.2 84 44.0
Medtr3g034640 Medicago truncatula HOM05D010359 ORTHO05D002252 2.3e-06 55.8 75 40.0
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 2.3e-06 55.8 116 33.6
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 2.3e-06 55.8 78 41.0
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 3.1e-06 55.5 91 36.3
CiPaw.06G136300 Carya illinoinensis HOM05D007556 ORTHO05D002252 3.1e-06 55.5 127 33.9
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.1e-06 55.5 83 36.1
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 3.1e-06 55.5 69 40.6
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-06 55.5 83 36.1
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.1e-06 55.5 82 36.6
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.0e-06 55.1 80 41.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 5.2e-06 54.7 86 38.4
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 5.2e-06 54.7 88 37.5
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.8e-06 54.3 100 35.0
Psat0s1116g0120 Pisum sativum HOM05D010359 ORTHO05D002252 6.8e-06 54.3 102 40.2
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.8e-06 54.3 83 37.3
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 6.8e-06 54.3 75 36.0
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 8.9e-06 53.9 89 36.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 8.9e-06 53.9 96 30.2
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 8.9e-06 53.9 63 42.9
Psat7g116800 Pisum sativum HOM05D010359 ORTHO05D002252 8.9e-06 53.9 85 37.6
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 8.9e-06 53.9 104 33.7
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 8.9e-06 53.9 111 32.4


User provided reference genes

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