Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 3.2e-62 241.9 153 100.0
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 1.4e-28 130.2 96 72.9
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 6.2e-21 104.8 125 54.4
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 4.0e-12 75.5 81 53.1
Manes.10G047933 Manihot esculenta HOM05D007556 ORTHO05D002252 2.6e-11 72.8 79 54.4
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.6e-11 72.8 67 52.2
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 3.4e-11 72.4 79 49.4
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 4.4e-11 72.0 86 50.0
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 1.3e-10 70.5 80 48.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.9e-10 69.3 78 42.3
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 3.8e-10 68.9 95 45.3
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 6.4e-10 68.2 102 41.2
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 8.4e-10 67.8 85 48.2
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.1e-09 67.4 101 45.5
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.4e-09 67.0 79 45.6
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.4e-09 67.0 79 41.8
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.4e-09 67.0 79 45.6
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.4e-09 66.2 84 42.9
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.4e-09 66.2 88 47.7
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 2.4e-09 66.2 102 40.2
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 3.2e-09 65.9 98 43.9
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 3.2e-09 65.9 98 43.9
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.2e-09 65.9 80 48.8
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.2e-09 65.9 88 50.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.2e-09 65.9 95 44.2
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.2e-09 65.9 95 44.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 4.1e-09 65.5 87 40.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 7.1e-09 64.7 79 40.5
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 7.1e-09 64.7 77 49.4
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 7.1e-09 64.7 95 44.2
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 9.2e-09 64.3 123 35.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 9.2e-09 64.3 91 41.8
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 9.2e-09 64.3 71 50.7
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-08 63.5 71 49.3
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.6e-08 63.5 93 36.6
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 2.1e-08 63.2 79 41.8
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.1e-08 63.2 80 45.0
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.7e-08 62.8 80 45.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 2.7e-08 62.8 87 37.9
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.7e-08 62.8 87 49.4
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 2.7e-08 62.8 59 55.9
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 3.5e-08 62.4 78 41.0
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.5e-08 62.4 83 48.2
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 3.5e-08 62.4 77 48.1
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 3.5e-08 62.4 76 43.4
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.6e-08 62.0 69 44.9
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.6e-08 62.0 94 45.7
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 4.6e-08 62.0 95 42.1
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 6.0e-08 61.6 79 41.8
Psat5g006440 Pisum sativum HOM05D010359 ORTHO05D002252 6.0e-08 61.6 85 42.4
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 6.0e-08 61.6 86 44.2
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 6.0e-08 61.6 71 42.3
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 7.8e-08 61.2 79 39.2
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.3e-07 60.5 83 39.8
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.3e-07 60.5 92 42.4
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.7e-07 60.1 83 42.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.7e-07 60.1 80 43.8
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.7e-07 60.1 84 40.5
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.7e-07 60.1 77 46.8
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.7e-07 60.1 67 46.3
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.7e-07 60.1 83 33.7
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.7e-07 60.1 78 37.2
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-07 59.7 99 38.4
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.0e-07 59.3 78 44.9
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.1e-07 58.5 83 33.7
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 5.1e-07 58.5 96 41.7
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 6.6e-07 58.2 80 40.0
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 6.6e-07 58.2 96 36.5
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 6.6e-07 58.2 66 43.9
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 6.6e-07 58.2 80 46.2
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 6.6e-07 58.2 92 44.6
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 8.6e-07 57.8 80 37.5
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 8.6e-07 57.8 80 37.5
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 8.6e-07 57.8 79 39.2
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 8.6e-07 57.8 82 40.2
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.1e-06 57.4 90 38.9
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.5e-06 57.0 89 41.6
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 1.5e-06 57.0 97 38.1
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.5e-06 57.0 86 40.7
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 1.5e-06 57.0 97 36.1
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.5e-06 57.0 76 42.1
Medtr3g034640 Medicago truncatula HOM05D010359 ORTHO05D002252 2.5e-06 56.2 83 38.6
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 2.5e-06 56.2 56 55.4
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-06 55.8 65 40.0
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.3e-06 55.8 65 40.0
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 3.3e-06 55.8 69 39.1
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 3.3e-06 55.8 69 46.4
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.3e-06 55.5 81 38.3
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 4.3e-06 55.5 99 39.4
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 4.3e-06 55.5 79 38.0
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 4.3e-06 55.5 73 39.7
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.3e-06 55.5 73 39.7
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.3e-06 55.5 69 49.3
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 4.3e-06 55.5 76 39.5
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 5.6e-06 55.1 68 48.5
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 5.6e-06 55.1 101 39.6
TPR.G38150 Trifolium pratense HOM05D010359 ORTHO05D002252 5.6e-06 55.1 86 39.5
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 7.3e-06 54.7 66 42.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 7.3e-06 54.7 75 37.3
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 7.3e-06 54.7 90 37.8
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 9.6e-06 54.3 83 36.1
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 9.6e-06 54.3 85 36.5


User provided reference genes

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