Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.7e-217 758.4 405 100.0
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.8e-189 666.0 405 85.7
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.3e-176 622.5 405 77.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 7.5e-175 617.5 406 77.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 9.8e-175 617.1 405 78.3
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-174 616.7 405 76.8
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.3e-174 616.7 405 76.8
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.3e-174 614.0 406 79.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.1e-173 611.7 405 75.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 5.4e-173 611.3 420 73.8
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 9.2e-173 610.5 405 76.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.0e-171 607.1 400 77.5
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.0e-171 607.1 405 76.3
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.3e-171 605.9 409 75.8
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 8.6e-171 604.0 405 75.3
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-170 603.6 405 75.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.3e-170 601.7 400 78.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.3e-170 601.7 406 75.1
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.6e-170 601.3 409 75.1
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 9.5e-170 600.5 409 74.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-169 599.7 409 75.1
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.1e-169 597.8 400 77.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 8.0e-169 597.4 406 76.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.0e-168 597.0 405 75.6
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.8e-168 596.3 409 74.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.3e-168 595.9 405 76.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.3e-168 595.9 402 74.9
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 4.0e-168 595.1 405 76.8
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.0e-168 595.1 409 74.8
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.2e-168 594.7 402 76.9
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 5.2e-168 594.7 405 74.1
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.9e-168 594.0 400 75.5
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.6e-167 592.4 405 73.1
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 3.4e-167 592.0 405 75.6
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.3e-166 590.1 405 75.3
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.7e-166 589.7 405 73.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-166 589.7 406 73.9
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.2e-166 589.3 400 76.0
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.9e-166 589.0 408 75.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.7e-166 588.6 406 73.6
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 6.4e-166 587.8 409 74.1
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 8.3e-166 587.4 406 72.7
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 8.3e-166 587.4 406 72.7
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.4e-165 586.6 405 71.6
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.0e-164 582.8 402 76.6
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 4.6e-164 581.6 405 72.6
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.0e-163 580.5 406 72.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.0e-163 578.9 409 72.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 3.9e-163 578.6 405 71.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.9e-163 578.6 407 71.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-162 577.0 409 72.6
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.5e-162 576.6 399 74.9
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.5e-162 575.9 406 72.9
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.3e-162 575.1 405 74.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.3e-162 575.1 405 74.1
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 5.6e-162 574.7 407 71.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 5.6e-162 574.7 407 71.7
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 7.3e-162 574.3 411 73.7
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.1e-161 572.8 405 76.0
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.6e-161 572.0 405 70.4
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 6.2e-161 571.2 406 73.6
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.1e-160 570.5 405 71.1
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.8e-160 569.7 410 71.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.3e-160 569.3 403 73.4
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.1e-160 568.9 405 73.1
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 3.1e-160 568.9 402 75.4
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 3.1e-160 568.9 389 74.3
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.6e-159 565.8 400 72.8
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.4e-159 565.5 401 75.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 7.5e-159 564.3 453 67.8
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 9.8e-159 563.9 406 74.9
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.3e-158 563.5 440 67.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.7e-158 563.1 406 72.4
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.9e-158 562.4 405 73.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.9e-158 561.6 405 71.6
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 6.4e-158 561.2 400 72.8
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 8.3e-158 560.8 400 71.5
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.4e-157 559.3 400 73.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.4e-157 559.3 405 72.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.2e-157 558.9 405 71.4
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.1e-157 558.5 402 71.9
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.5e-156 555.4 405 70.6
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.5e-156 555.4 443 68.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 7.8e-156 554.3 400 70.0
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.3e-155 552.7 406 70.2
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.1e-154 550.4 402 73.1
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-154 549.3 406 70.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.5e-154 549.3 406 70.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.3e-154 548.9 406 70.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 9.5e-154 547.4 401 68.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-153 546.6 406 70.2
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.1e-153 546.2 406 70.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 4.7e-153 545.0 410 69.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.4e-152 543.5 406 69.7
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.3e-152 542.7 406 70.7
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.1e-152 542.3 401 69.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-151 540.4 431 66.8
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.0e-151 539.7 405 68.1
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.0e-151 539.7 398 68.1
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.0e-151 539.7 450 62.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.2e-150 536.2 405 67.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.7e-150 535.4 406 68.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.3e-150 534.3 412 68.4
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.4e-149 531.6 405 70.1
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 9.2e-149 530.8 405 69.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-148 530.0 406 65.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 7.8e-148 527.7 405 66.7
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.9e-147 525.4 403 70.5
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-146 523.9 406 66.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 4.3e-146 521.9 407 67.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.6e-145 518.8 398 65.1
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.1e-144 517.3 406 66.0
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 3.1e-144 515.8 405 67.9
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.0e-143 513.1 408 67.6
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 3.5e-140 502.3 399 64.2
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 4.0e-136 488.8 405 59.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.9e-136 488.0 416 63.5
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-131 474.2 362 67.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 9.3e-125 451.1 334 71.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.7e-124 449.5 520 50.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.1e-121 439.9 333 68.2
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.1e-121 438.0 375 61.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.4e-120 437.2 435 57.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.2e-117 426.0 295 71.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.3e-113 414.1 442 55.4
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.8e-111 405.2 410 55.6
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.8e-111 405.2 410 55.6
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.3e-110 404.1 404 56.9
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.3e-110 404.1 405 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.4e-96 356.7 399 49.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 4.2e-93 345.9 407 48.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 9.4e-93 344.7 405 54.3
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 2.4e-80 303.5 405 48.4
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.1e-76 290.4 203 71.4
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-67 260.4 364 43.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.3e-65 254.6 431 38.7
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-62 243.8 276 53.3
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.7e-57 226.5 306 42.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-49 199.5 149 69.1
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.9e-43 178.7 145 71.0
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.3e-30 137.5 100 69.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 8.4e-25 119.0 421 27.3
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-24 118.2 95 58.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 4.2e-24 116.7 128 50.8
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.2e-24 115.5 94 63.8
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.9e-21 107.8 69 72.5
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.2e-20 105.1 84 71.4
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.6e-20 104.8 73 68.5
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.4e-19 100.9 60 80.0
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.6e-18 95.9 68 66.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.9e-18 95.5 79 68.4
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 2.9e-17 94.0 411 26.0
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.5e-15 87.0 453 24.9
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.6e-15 86.7 379 25.1
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.9e-08 64.7 61 50.8
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.6e-07 61.6 55 56.4
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 3.9e-06 57.0 86 41.9


User provided reference genes

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