Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 5.6e-59 230.7 115 100.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 3.9e-36 154.8 113 73.5
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.1e-35 153.3 116 68.1
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 8.1e-34 147.1 117 65.0
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.4e-32 141.7 118 65.3
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.7e-31 139.4 115 66.1
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.8e-26 122.1 113 59.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.3e-26 120.9 114 51.8
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 8.2e-26 120.6 115 53.9
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 4.5e-24 114.8 102 53.9
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 3.8e-23 111.7 114 50.0
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 6.5e-23 110.9 126 50.0
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.5e-22 109.0 118 52.5
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 7.2e-22 107.5 98 58.2
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.2e-21 106.7 107 54.2
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-21 104.8 126 50.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 7.9e-21 104.0 121 47.1
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.9e-21 104.0 114 54.4
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.3e-20 103.2 118 49.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.3e-20 102.4 104 52.9
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 3.9e-20 101.7 122 50.0
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 5.1e-20 101.3 114 50.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 6.7e-20 100.9 130 46.2
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 6.7e-20 100.9 120 55.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 8.7e-20 100.5 123 49.6
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 8.7e-20 100.5 104 51.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.1e-19 100.1 118 47.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.5e-19 99.8 112 50.9
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.9e-19 99.4 115 50.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.3e-19 98.2 125 45.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 4.3e-19 98.2 130 46.2
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.4e-19 97.4 114 46.5
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.7e-19 97.1 114 46.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.7e-19 97.1 114 46.5
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.3e-18 96.7 116 52.6
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 2.2e-18 95.9 132 44.7
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 2.2e-18 95.9 115 46.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.8e-18 95.5 116 48.3
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-18 95.5 116 48.3
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-18 95.5 116 48.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 6.3e-18 94.4 135 43.7
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.3e-18 94.4 70 65.7
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.8e-17 92.8 118 45.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 2.4e-17 92.4 111 51.4
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.4e-17 92.4 109 47.7
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.4e-17 92.4 119 47.9
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.1e-17 91.7 117 46.2
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 4.1e-17 91.7 114 46.5
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.9e-17 90.9 113 48.7
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-16 90.1 100 51.0
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-16 90.1 113 47.8
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-16 90.1 114 47.4
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.5e-16 89.7 100 51.0
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.5e-16 89.7 118 44.9
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-16 89.4 115 44.3
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.0e-16 89.4 115 44.3
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.0e-16 89.4 106 52.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.6e-16 89.0 113 48.7
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.6e-16 89.0 115 44.3
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.4e-16 88.6 119 47.1
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.4e-16 88.6 102 50.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.5e-16 88.2 125 47.2
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.5e-16 88.2 101 48.5
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 7.7e-16 87.4 85 49.4
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.7e-16 87.4 102 50.0
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.2e-15 85.9 100 49.0
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 3.8e-15 85.1 82 53.7
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-14 83.6 68 61.8
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.4e-14 83.2 134 44.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.9e-14 82.8 112 45.5
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.9e-14 82.8 133 42.9
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.9e-14 82.8 102 49.0
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 2.5e-14 82.4 123 37.4
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.5e-14 82.4 72 56.9
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 3.2e-14 82.0 135 35.6
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 5.5e-14 81.3 113 44.2
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.2e-14 80.9 67 58.2
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 7.2e-14 80.9 135 37.8
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 7.2e-14 80.9 116 41.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 7.2e-14 80.9 143 35.7
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 9.4e-14 80.5 122 43.4
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.2e-13 80.1 79 51.9
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-13 79.7 82 57.3
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.6e-13 79.7 118 41.5
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.6e-13 79.7 104 44.2
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.1e-13 79.3 93 48.4
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.1e-13 79.3 68 57.4
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-13 79.3 112 43.8
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.7e-13 79.0 63 60.3
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 2.7e-13 79.0 146 37.0
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.6e-13 78.6 117 43.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.6e-13 78.6 78 55.1
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-13 78.2 83 55.4
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.1e-13 77.8 118 44.9
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.0e-12 77.0 99 45.5
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.0e-12 77.0 128 39.8
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 117 43.6
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.0e-12 77.0 117 43.6
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 1.4e-12 76.6 100 45.0
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-12 76.6 118 43.2
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.4e-12 76.6 104 44.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.8e-12 76.3 98 45.9
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.8e-12 76.3 101 42.6
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 3.0e-12 75.5 73 49.3
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 5.1e-12 74.7 123 38.2
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 6.7e-12 74.3 69 52.2
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 6.7e-12 74.3 112 43.8
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.7e-12 74.3 99 47.5
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 8.8e-12 73.9 119 40.3
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 8.8e-12 73.9 69 55.1
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.5e-11 73.2 94 51.1
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.5e-11 73.2 99 46.5
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.0e-11 72.8 108 42.6
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.5e-11 72.4 117 46.2
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.3e-11 72.0 60 60.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 3.3e-11 72.0 77 51.9
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 4.3e-11 71.6 99 43.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 4.3e-11 71.6 111 43.2
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 5.7e-11 71.2 82 46.3
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.4e-11 70.9 86 45.3
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 7.4e-11 70.9 78 51.3
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 7.4e-11 70.9 65 50.8
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-10 69.7 118 41.5
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 2.2e-10 69.3 87 44.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.8e-10 68.2 79 51.9
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.2e-10 67.4 58 55.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.1e-09 67.0 108 42.6
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 1.8e-09 66.2 119 37.0
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.4e-09 65.9 64 53.1
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.4e-09 65.9 70 55.7
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.1e-09 65.5 76 48.7
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 5.3e-09 64.7 100 45.0
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 9.1e-09 63.9 120 40.0
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.1e-09 63.9 58 53.4
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.5e-08 63.2 105 42.9
CSS0018861 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.5e-08 63.2 83 44.6
CSS0040409 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.5e-08 63.2 83 44.6
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 63 54.0
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 2.0e-08 62.8 100 41.0
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 2.6e-08 62.4 71 49.3
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 108 39.8
CSS0000743 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-08 61.6 83 43.4
CSS0049445 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.5e-08 61.6 83 43.4
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.5e-08 61.6 58 51.7
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 4.5e-08 61.6 105 44.8
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 4.5e-08 61.6 114 39.5
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 5.9e-08 61.2 74 45.9
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 5.9e-08 61.2 107 35.5
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.0e-07 60.5 81 42.0
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 1.3e-07 60.1 71 49.3
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 1.7e-07 59.7 121 38.0
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 2.2e-07 59.3 121 37.2
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 2.2e-07 59.3 121 37.2
AL3G21910 Arabidopsis lyrata HOM05D008699 ORTHO05D012283 2.9e-07 58.9 121 36.4
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 3.8e-07 58.5 121 37.2
Glyma.12G082800 Glycine max HOM05D014522 ORTHO05D004438 5.0e-07 58.2 104 37.5
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 5.0e-07 58.2 70 47.1
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 6.5e-07 57.8 123 38.2
BraA03t12826Z Brassica rapa HOM05D008699 ORTHO05D012283 6.5e-07 57.8 121 33.9
Lj3g0006440 Lotus japonicus HOM05D014522 ORTHO05D004438 6.5e-07 57.8 105 38.1
A03p36610 Brassica napus HOM05D008699 ORTHO05D012283 8.5e-07 57.4 120 32.5
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 8.5e-07 57.4 123 38.2
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 8.5e-07 57.4 123 38.2
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 8.5e-07 57.4 123 38.2
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 8.5e-07 57.4 123 38.2
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 8.5e-07 57.4 74 45.9
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 1.1e-06 57.0 134 33.6
ATR0998G003 Amborella trichopoda HOM05D018057 ORTHO05D004438 1.9e-06 56.2 69 47.8
BcaC01g04175 Brassica carinata HOM05D008699 ORTHO05D012283 2.5e-06 55.8 121 33.9
C03p44240 Brassica napus HOM05D008699 ORTHO05D012283 2.5e-06 55.8 121 33.9
BolC3t16694H Brassica oleracea HOM05D008699 ORTHO05D012283 2.5e-06 55.8 121 33.9
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.5e-06 55.8 146 30.1
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 3.2e-06 55.5 117 38.5
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 3.2e-06 55.5 121 38.8
CSS0026411 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 3.2e-06 55.5 67 43.3
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 3.2e-06 55.5 70 47.1
CSS0015170 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.2e-06 55.1 83 41.0
Carub.0003s0976 Capsella rubella HOM05D008699 ORTHO05D012283 4.2e-06 55.1 121 35.5
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 4.2e-06 55.1 75 41.3
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 4.2e-06 55.1 71 42.3
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 4.2e-06 55.1 71 42.3
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 5.5e-06 54.7 81 43.2
BcaB04g18593 Brassica carinata HOM05D008699 ORTHO05D012283 5.5e-06 54.7 120 34.2
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 5.5e-06 54.7 71 45.1
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 5.5e-06 54.7 63 47.6


User provided reference genes

Program Settings