Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.4e-237 824.7 440 100.0
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.0e-129 467.6 443 63.2
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-101 373.6 447 51.7
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 5.4e-94 349.0 451 50.3
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.6e-92 341.7 493 47.9
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 7.3e-91 338.6 437 48.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 7.6e-88 328.6 442 48.4
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.8e-85 318.5 443 46.5
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.2e-82 311.2 442 47.3
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-81 307.8 443 45.4
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.2e-80 304.7 443 45.8
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.0e-80 303.9 443 45.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.9e-79 300.1 454 44.5
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.9e-76 289.7 550 40.0
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.0e-72 277.3 546 37.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 7.6e-72 275.4 491 41.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 9.9e-72 275.0 442 42.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.7e-71 274.2 490 41.4
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.4e-70 271.2 450 44.7
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 7.1e-70 268.9 498 38.8
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 9.3e-70 268.5 442 43.9
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 2.8e-66 256.9 516 36.8
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 4.8e-66 256.1 477 40.9
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.8e-65 254.2 438 41.3
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 2.4e-65 253.8 500 38.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-63 247.3 442 44.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.4e-62 244.6 493 38.5
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.9e-62 244.2 487 37.6
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 2.4e-62 243.8 487 37.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.4e-62 243.8 531 38.2
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-60 238.4 487 37.2
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 2.3e-60 237.3 501 38.5
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.1e-59 235.0 460 36.3
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.1e-58 230.7 432 40.0
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.4e-57 228.0 486 37.4
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 6.9e-57 225.7 462 37.7
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.6e-56 223.8 462 37.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.6e-56 222.2 445 36.6
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.7e-55 221.1 458 38.2
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 2.9e-55 220.3 465 37.4
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.4e-54 218.0 448 35.5
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 1.9e-54 217.6 448 36.6
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.1e-53 214.2 484 35.5
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.1e-53 214.2 469 37.3
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 3.5e-53 213.4 479 36.1
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-52 211.5 499 34.3
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.5e-51 207.2 556 32.7
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.3e-50 204.9 537 34.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 3.7e-50 203.4 500 33.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.8e-50 203.0 529 32.7
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 4.8e-50 203.0 498 34.9
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-49 201.4 513 32.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.8e-49 201.1 468 35.3
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.8e-49 201.1 531 32.4
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.4e-49 200.7 537 32.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 4.1e-49 199.9 502 33.1
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 9.0e-49 198.7 505 32.7
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 9.0e-49 198.7 541 33.1
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.0e-48 197.6 502 35.1
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.4e-48 196.8 508 33.7
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.6e-48 195.7 524 33.0
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.3e-47 194.9 515 33.4
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 3.8e-47 193.4 512 33.0
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.1e-46 191.8 502 33.5
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.5e-46 190.7 507 33.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 7.2e-46 189.1 166 65.7
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 9.3e-46 188.7 518 33.2
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 3.5e-45 186.8 505 31.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 3.9e-44 183.3 364 39.8
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-42 178.3 443 33.6
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.2e-42 177.6 471 32.5
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.8e-42 176.4 484 34.3
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 4.8e-42 176.4 538 31.6
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 4.8e-42 176.4 612 30.4
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 6.3e-42 176.0 446 33.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 8.2e-42 175.6 547 31.1
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.2e-40 171.8 500 31.0
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 8.5e-39 165.6 503 32.2
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 8.5e-39 165.6 427 34.4
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.4e-38 164.9 450 34.7
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 1.9e-38 164.5 163 58.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 2.5e-38 164.1 507 31.8
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 3.6e-37 160.2 235 45.5
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.0e-36 158.7 506 29.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.8e-36 157.9 550 30.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.0e-36 157.1 557 29.8
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.5e-35 154.8 517 30.0
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.0e-35 154.5 260 41.2
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.3e-35 153.7 511 31.1
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 7.4e-35 152.5 493 31.6
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.7e-34 151.4 515 29.9
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 6.3e-34 149.4 451 32.2
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.5e-32 144.8 452 32.1
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.4e-32 143.7 497 29.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 4.5e-32 143.3 474 32.5
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 4.5e-32 143.3 474 32.5
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 4.5e-32 143.3 404 32.7
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 4.5e-32 143.3 420 32.1
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.3e-31 141.7 491 28.9
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.4e-30 138.3 461 30.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.9e-30 137.9 184 47.3
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.1e-29 134.4 461 31.7
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.6e-29 133.7 434 31.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 7.9e-29 132.5 399 31.3
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.3e-26 125.2 313 36.4
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.1e-25 120.2 119 55.5
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.6e-24 117.5 436 30.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 2.6e-24 117.5 439 31.2
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 1.2e-21 108.6 90 64.4
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.6e-21 108.2 207 39.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 3.6e-21 107.1 391 28.6
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 8.0e-21 105.9 437 27.9
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 9.7e-19 99.0 95 61.1
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.7e-18 98.2 86 55.8
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.2e-18 97.8 114 52.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.5e-16 90.5 177 39.5
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 6.5e-15 86.3 93 47.3
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 6.3e-10 69.7 80 43.8
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 8.3e-10 69.3 253 26.1
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.1e-09 67.4 82 39.0
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 3.1e-09 67.4 303 25.1
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 7.0e-09 66.2 163 33.1
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 9.1e-09 65.9 76 47.4
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.2e-08 65.5 91 36.3
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.6e-08 65.1 92 37.0
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.0e-08 64.7 71 45.1
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.0e-08 64.7 78 37.2
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.5e-08 63.5 76 44.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.5e-08 63.5 91 35.2
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.5e-08 63.5 90 36.7
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 5.9e-08 63.2 171 31.0
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 1.0e-07 62.4 137 30.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.0e-07 62.4 61 44.3
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.3e-07 62.0 76 43.4
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.3e-07 62.0 91 34.1
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.3e-07 62.0 252 24.6
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.2e-07 61.2 79 43.0
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.2e-07 61.2 180 31.1
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.8e-07 60.5 50 52.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 3.8e-07 60.5 228 27.6
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.8e-07 60.5 134 32.1
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 5.0e-07 60.1 81 40.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.5e-07 59.7 86 33.7
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.1e-06 58.9 79 36.7
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.1e-06 58.9 55 47.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.1e-06 58.9 85 32.9
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.1e-06 58.9 69 43.5
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 1.5e-06 58.5 145 29.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.5e-06 58.5 85 36.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.5e-06 58.5 94 34.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.9e-06 58.2 61 44.3
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.5e-06 57.8 209 26.3
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 3.2e-06 57.4 42 76.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 3.2e-06 57.4 196 27.0
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 3.2e-06 57.4 73 41.1
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 4.2e-06 57.0 75 37.3
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 4.2e-06 57.0 76 36.8
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 5.5e-06 56.6 162 27.2
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 5.5e-06 56.6 85 30.6
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 7.2e-06 56.2 54 48.1
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 7.2e-06 56.2 78 37.2
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 9.4e-06 55.8 97 34.0
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 9.4e-06 55.8 96 34.4
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 9.4e-06 55.8 75 38.7
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 9.4e-06 55.8 75 38.7
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 9.4e-06 55.8 75 38.7


User provided reference genes

Program Settings