Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 9.0e-46 186.8 112 100.0
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 6.7e-33 144.1 92 96.7
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 8.8e-25 117.1 79 96.2
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 7.7e-21 104.0 79 89.9
Manes.07G090700 Manihot esculenta HOM05D002160 ORTHO05D002012 1.3e-20 103.2 60 96.7
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-15 85.9 77 64.9
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-15 85.9 77 64.9
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 2.2e-15 85.9 77 64.9
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.8e-15 84.7 78 64.1
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 8.2e-15 84.0 81 66.7
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-14 83.6 77 63.6
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.4e-14 82.4 87 69.0
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.1e-14 82.0 78 60.3
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.1e-14 80.5 78 61.5
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.2e-13 80.1 82 67.1
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.2e-13 80.1 79 60.8
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 1.6e-13 79.7 83 72.3
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.7e-13 79.0 79 65.8
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.5e-13 78.6 81 64.2
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 3.5e-13 78.6 82 64.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.5e-13 78.2 81 65.4
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.5e-13 78.2 81 65.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.5e-13 78.2 81 64.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.9e-13 77.8 81 65.4
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.9e-13 77.8 83 63.9
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 7.7e-13 77.4 81 65.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 7.7e-13 77.4 81 63.0
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.0e-12 77.0 81 58.0
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.0e-12 77.0 81 65.4
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.3e-12 76.6 81 64.2
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.3e-12 76.6 81 63.0
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.3e-12 76.6 82 64.6
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.2e-12 75.9 81 61.7
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 2.9e-12 75.5 81 63.0
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.9e-12 75.5 78 59.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.9e-12 75.5 81 61.7
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.8e-12 75.1 84 61.9
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 3.8e-12 75.1 81 61.7
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.8e-12 75.1 79 67.1
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 3.8e-12 75.1 85 60.0
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 5.0e-12 74.7 83 62.7
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 6.5e-12 74.3 81 63.0
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 8.5e-12 73.9 81 64.2
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.5e-12 73.9 81 60.5
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 8.5e-12 73.9 81 59.3
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 8.5e-12 73.9 81 61.7
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 1.1e-11 73.6 82 62.2
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.5e-11 73.2 81 61.7
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 1.9e-11 72.8 77 54.5
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.2e-11 72.0 81 48.1
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.2e-11 72.0 77 53.2
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 3.2e-11 72.0 83 60.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 3.2e-11 72.0 82 54.9
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 4.2e-11 71.6 81 60.5
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.2e-11 70.9 81 49.4
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 7.2e-11 70.9 78 56.4
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 7.2e-11 70.9 80 46.2
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 7.2e-11 70.9 82 57.3
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 7.2e-11 70.9 84 58.3
QL01p032020 Quercus lobata HOM05D002160 ORTHO05D002012 7.2e-11 70.9 78 70.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.4e-11 70.5 81 59.3
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-10 70.1 82 59.8
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-10 70.1 82 59.8
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.2e-10 70.1 81 60.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.2e-10 70.1 81 61.7
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.6e-10 69.7 79 65.8
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.1e-10 69.3 77 51.9
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 2.7e-10 68.9 81 60.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.6e-10 68.6 79 59.5
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 4.7e-10 68.2 82 58.5
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 6.1e-10 67.8 85 57.6
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 8.0e-10 67.4 82 61.0
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-09 66.6 81 58.0
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-09 66.6 81 58.0
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.3e-09 65.9 63 71.4
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.3e-09 65.9 75 46.7
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.0e-09 65.5 80 58.8
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.0e-09 65.1 79 59.5
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 4.0e-09 65.1 76 44.7
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 4.0e-09 65.1 81 61.7
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 6.8e-09 64.3 82 67.1
Eucgr.J02054 Eucalyptus grandis HOM05D002160 ORTHO05D002012 6.8e-09 64.3 61 70.5
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.8e-09 64.3 82 54.9
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 6.8e-09 64.3 81 59.3
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 8.8e-09 63.9 78 59.0
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 8.8e-09 63.9 82 48.8
GSVIVG01024970001 Vitis vinifera HOM05D002160 ORTHO05D002012 8.8e-09 63.9 84 63.1
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.2e-08 63.5 79 55.7
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.5e-08 63.2 84 54.8
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 1.5e-08 63.2 78 57.7
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.0e-08 62.8 79 53.2
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 2.6e-08 62.4 82 54.9
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 2.6e-08 62.4 77 51.9
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 2.6e-08 62.4 81 58.0
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 3.4e-08 62.0 80 58.8
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 3.4e-08 62.0 59 67.8
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 3.4e-08 62.0 79 69.6
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.4e-08 62.0 82 53.7
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 4.4e-08 61.6 80 58.8
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.4e-08 61.6 83 47.0
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.7e-08 61.2 78 55.1
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.7e-08 61.2 57 70.2
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 5.7e-08 61.2 80 53.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 5.7e-08 61.2 80 53.8
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 9.8e-08 60.5 82 56.1
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 9.8e-08 60.5 55 47.3
CiPaw.13G094500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-07 60.1 80 65.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.3e-07 60.1 80 53.8
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.2e-07 59.3 80 57.5
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 3.7e-07 58.5 83 44.6
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 3.7e-07 58.5 59 71.2
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 3.7e-07 58.5 81 58.0
Potri.001G040200 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.7e-07 58.5 57 68.4
Potri.001G041268 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.7e-07 58.5 57 68.4
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 4.8e-07 58.2 82 51.2
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.8e-07 58.2 80 62.5
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 6.3e-07 57.8 83 44.6
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 6.3e-07 57.8 83 44.6
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 6.3e-07 57.8 83 44.6
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 6.3e-07 57.8 78 71.8
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 6.3e-07 57.8 58 56.9
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 8.3e-07 57.4 79 43.0
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 8.3e-07 57.4 108 42.6
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 1.1e-06 57.0 78 70.5
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.1e-06 57.0 80 53.8
PSO151G0155 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-06 57.0 54 68.5
PSO339G0803 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-06 57.0 54 68.5
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.4e-06 56.6 58 50.0
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.4e-06 56.6 81 51.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.4e-06 56.6 83 43.4
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.4e-06 56.6 83 43.4
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.4e-06 56.6 84 53.6
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-06 56.2 83 43.4
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-06 56.2 83 43.4
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-06 56.2 83 43.4
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.8e-06 56.2 83 43.4
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.8e-06 56.2 85 45.9
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 1.8e-06 56.2 59 67.8
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 2.4e-06 55.8 57 54.4
Potri.013G131200 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.4e-06 55.8 57 66.7
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 2.4e-06 55.8 48 81.2
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 3.1e-06 55.5 54 55.6
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.1e-06 55.1 83 43.4
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 4.1e-06 55.1 82 51.2
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 4.1e-06 55.1 58 50.0
CANSAT54G0665 Cannabis sativa HOM05D002160 ORTHO05D002012 5.4e-06 54.7 79 49.4
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 5.4e-06 54.7 90 47.8
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 7.0e-06 54.3 82 50.0
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 7.0e-06 54.3 82 50.0
CSS0046936 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 7.0e-06 54.3 78 70.5
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 9.1e-06 53.9 61 45.9


User provided reference genes

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