Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.1e-134 483.4 262 100.0
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.4e-126 454.5 262 93.5
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 89.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 90.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 8.7e-124 447.2 262 88.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.5e-123 446.4 262 88.9
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.3e-123 445.3 262 89.7
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.3e-123 444.1 262 88.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-122 443.4 262 88.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.9
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.9
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 88.9
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 88.9
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.1e-122 442.6 262 88.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.1e-122 442.6 262 88.5
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.2
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 87.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 87.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 88.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 5.3e-121 438.0 262 87.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 87.4
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 88.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 86.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 87.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 86.3
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 86.6
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.8
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 87.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 87.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.3
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 86.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.4
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.7e-119 433.0 263 87.8
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.9
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 87.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 87.0
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 87.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-118 429.5 263 87.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 86.6
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 88.5
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 7.1e-118 427.6 259 88.4
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 7.1e-118 427.6 261 85.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 9.3e-118 427.2 263 86.3
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 86.3
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-117 426.4 263 86.3
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 86.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.3
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.3
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.7
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 86.6
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.9
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.1
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.1
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 85.5
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.6
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 85.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 85.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 85.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 85.5
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 83.6
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 83.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 82.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 85.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 83.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.3e-113 411.4 263 83.7
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 81.3
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-112 410.2 252 84.9
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.0e-112 409.5 264 82.2
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 4.5e-112 408.3 264 83.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 7.6e-112 407.5 247 89.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.3e-111 406.8 264 82.6
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 3.8e-111 405.2 262 83.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 82.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.8e-111 405.2 247 88.3
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 8.4e-111 404.1 263 81.0
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 8.4e-111 404.1 262 81.3
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 8.4e-111 404.1 255 85.1
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.2e-110 401.7 246 87.4
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.0e-109 397.9 263 82.9
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 7.9e-109 397.5 263 82.9
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 7.9e-109 397.5 262 80.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 79.4
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.2
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 77.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 264 82.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 78.2
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.9
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 78.2
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.1e-106 389.4 270 77.8
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 77.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.4e-105 386.7 263 77.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-105 386.7 263 77.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.4e-105 386.7 263 77.9
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 81.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.0e-105 384.0 263 80.2
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.5e-104 383.3 263 80.6
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 4.5e-104 381.7 248 82.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 5.8e-104 381.3 270 77.0
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 4.9e-103 378.3 264 78.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 7.1e-102 374.4 262 77.9
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 6.7e-100 367.9 262 77.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.5e-99 366.7 218 89.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.8e-98 361.7 249 74.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.1e-97 359.0 241 81.7
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.7e-95 353.2 226 81.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.1e-94 350.5 263 70.7
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.2e-94 348.6 234 77.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.6e-93 346.7 210 86.7
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.8e-92 340.9 263 69.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.0e-91 339.7 219 79.9
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.7e-91 338.2 214 83.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 9.7e-91 337.4 262 71.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 5.3e-89 331.6 219 79.5
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.3e-81 305.1 218 72.9
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.2e-80 303.9 247 69.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.3e-79 300.4 236 66.1
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-79 299.3 250 68.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.9e-78 296.6 204 79.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.9e-78 296.6 267 60.7
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 8.0e-77 291.2 250 66.8
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 6.3e-74 281.6 208 70.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-70 270.4 262 63.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 4.7e-69 265.4 263 59.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 8.0e-69 264.6 270 57.4
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.0e-67 260.0 211 65.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.0e-60 236.1 235 61.7
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.0e-55 221.1 246 50.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.7e-53 212.2 130 81.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-50 202.6 245 49.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.7e-50 202.6 120 85.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-49 200.3 138 78.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.6e-48 197.2 118 88.1
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 6.1e-45 185.3 179 59.2
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.9e-38 163.7 191 53.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.4e-33 146.7 127 64.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.3e-31 140.2 96 75.0
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 9.2e-25 118.2 69 87.0


User provided reference genes

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