Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 3.3e-141 505.0 246 100.0
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 6.5e-113 411.0 244 79.9
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 1.0e-110 403.7 243 79.0
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.9e-109 399.4 238 79.0
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 2.5e-109 399.1 238 76.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.3e-109 398.3 238 77.3
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 5.7e-109 397.9 238 78.6
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 1.8e-107 392.9 238 77.3
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 5.3e-107 391.3 236 77.5
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 9.0e-107 390.6 238 75.6
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 2.6e-106 389.0 238 76.1
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 4.5e-106 388.3 242 73.1
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 5.9e-106 387.9 238 76.1
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 5.9e-106 387.9 238 76.9
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 7.7e-106 387.5 239 75.3
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 2.9e-105 385.6 238 74.4
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 3.8e-105 385.2 237 75.9
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 3.8e-105 385.2 242 74.0
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.1e-104 383.6 240 75.8
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 1.9e-104 382.9 238 74.4
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 9.4e-104 380.6 238 73.9
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 2.7e-103 379.0 238 72.7
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 6.1e-103 377.9 239 73.6
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 1.4e-102 376.7 243 72.4
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 1.8e-102 376.3 244 70.5
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 1.1e-101 373.6 244 72.5
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 7.4e-101 370.9 236 73.3
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.2e-100 369.4 237 71.7
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 2.2e-100 369.4 239 74.5
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 2.2e-100 369.4 238 72.3
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 6.3e-100 367.9 241 73.0
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 8.2e-100 367.5 233 75.1
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 1.4e-99 366.7 239 72.4
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 1.8e-99 366.3 243 72.4
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 3.1e-99 365.5 241 72.6
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 4.1e-99 365.2 239 71.5
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 4.1e-99 365.2 237 71.7
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 5.3e-99 364.8 241 71.0
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 5.3e-99 364.8 241 72.6
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 1.2e-98 363.6 238 71.0
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 2.6e-98 362.5 238 71.0
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 2.6e-98 362.5 242 69.4
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 2.6e-98 362.5 239 71.5
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 4.5e-98 361.7 238 71.8
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 4.5e-98 361.7 238 70.6
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 4.5e-98 361.7 284 62.3
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 1.0e-97 360.5 236 72.5
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 2.9e-97 359.0 239 70.3
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 3.8e-97 358.6 238 70.2
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 1.9e-96 356.3 238 69.3
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 3.2e-96 355.5 238 69.3
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 4.2e-96 355.1 243 70.4
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 5.5e-96 354.8 239 69.9
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 7.2e-96 354.4 239 70.7
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 9.4e-96 354.0 238 69.3
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 9.4e-96 354.0 239 69.5
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.6e-95 353.2 238 68.9
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.1e-95 352.8 243 69.5
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 2.1e-95 352.8 237 70.9
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.7e-95 352.4 243 70.4
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 3.6e-95 352.1 236 70.3
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 6.1e-95 351.3 238 68.9
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 5.7e-93 344.7 242 69.0
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 9.7e-93 344.0 236 69.5
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.8e-92 342.4 257 66.1
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 3.7e-92 342.0 237 69.2
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 1.6e-90 336.7 237 67.5
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 7.7e-90 334.3 235 67.2
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 1.7e-89 333.2 219 71.7
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.7e-89 333.2 239 69.5
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 2.9e-89 332.4 236 67.4
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 2.9e-89 332.4 235 66.8
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 5.0e-89 331.6 182 80.8
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 3.6e-87 325.5 238 64.7
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 4.7e-87 325.1 238 65.5
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 6.1e-87 324.7 234 65.0
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 3.0e-86 322.4 239 66.9
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 2.2e-84 316.2 236 63.6
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 3.7e-84 315.5 243 61.3
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 1.4e-83 313.5 243 60.9
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 4.1e-83 312.0 234 62.8
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 4.1e-83 312.0 237 62.0
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 2.7e-82 309.3 273 56.4
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 3.5e-82 308.9 238 66.4
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 7.2e-80 301.2 187 74.9
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 2.0e-74 283.1 181 70.7
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 2.2e-73 279.6 182 69.8
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 1.9e-72 276.6 236 59.7
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 2.5e-72 276.2 182 70.3
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 2.5e-72 276.2 182 70.3
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 2.5e-72 276.2 232 55.2
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 9.4e-72 274.2 232 54.7
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 4.0e-70 268.9 183 69.9
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 5.7e-69 265.0 182 69.2
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.1e-67 260.8 187 65.8
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 1.4e-67 260.4 232 51.7
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 2.4e-67 259.6 235 51.5
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.0e-61 240.0 178 64.6
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 2.0e-61 240.0 228 49.1
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 4.4e-61 238.8 180 60.6
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.8e-59 233.4 229 50.7
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 4.7e-55 218.8 245 43.7
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 1.8e-54 216.9 199 49.7
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 6.8e-54 214.9 230 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 8.3e-52 208.0 215 46.5
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 1.5e-48 197.2 147 55.8
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 9.5e-48 194.5 109 75.2
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 1.6e-47 193.7 179 48.0
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.2e-39 167.5 181 47.0
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 9.2e-35 151.4 217 36.9
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 6.6e-33 145.2 238 39.5
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 2.2e-28 130.2 106 63.2
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 1.5e-24 117.5 241 28.6


User provided reference genes

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