Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G083301 Manihot esculenta HOM05D004591 ORTHO05D005749 3.6e-94 348.2 171 100.0
Manes.15G015000 Manihot esculenta HOM05D004591 ORTHO05D005749 1.7e-67 259.6 153 87.6
Ciclev10005060m.g Citrus clementina HOM05D004591 ORTHO05D005749 2.0e-65 252.7 153 84.3
Potri.008G215300 Populus trichocarpa HOM05D004591 ORTHO05D005749 6.0e-65 251.1 153 83.7
Potri.010G022300 Populus trichocarpa HOM05D004591 ORTHO05D005749 6.0e-65 251.1 153 83.7
RcHm_v2.0_Chr4g0421481 Rosa chinensis HOM05D004591 ORTHO05D005749 6.0e-65 251.1 153 84.3
Manes.03G192300 Manihot esculenta HOM05D004591 ORTHO05D005749 1.3e-64 250.0 153 83.7
Duzib151G0997 Durio zibethinus HOM05D004591 ORTHO05D005749 1.7e-64 249.6 154 85.1
MD16G1173200 Malus domestica HOM05D004591 ORTHO05D005749 2.3e-64 249.2 153 83.7
QL06p007990 Quercus lobata HOM05D004591 ORTHO05D005749 3.0e-64 248.8 158 82.3
Gohir.A10G161800 Gossypium hirsutum HOM05D004591 ORTHO05D005749 5.0e-64 248.1 154 83.8
Gohir.D10G168300 Gossypium hirsutum HOM05D004591 ORTHO05D005749 5.0e-64 248.1 154 83.8
Gorai.011G187900 Gossypium raimondii HOM05D004591 ORTHO05D005749 5.0e-64 248.1 154 83.8
Thecc.04G279900 Theobroma cacao HOM05D004591 ORTHO05D005749 5.0e-64 248.1 154 83.8
Hma1.2p1_0698F.1_g205415 Hydrangea macrophylla HOM05D004591 ORTHO05D005749 1.1e-63 246.9 154 83.8
Atru.chr4.2787 Acer truncatum HOM05D004591 ORTHO05D005749 1.5e-63 246.5 153 82.4
CiPaw.02G085000 Carya illinoinensis HOM05D004591 ORTHO05D005749 1.5e-63 246.5 153 82.4
Actinidia01943 Actinidia chinensis HOM05D004591 ORTHO05D005749 2.5e-63 245.7 154 82.5
PGR004G2200 Punica granatum HOM05D004591 ORTHO05D005749 3.3e-63 245.4 153 81.7
Hund20576 Selenicereus undatus HOM05D004591 ORTHO05D005749 3.3e-63 245.4 154 83.1
MD13G1171500 Malus domestica HOM05D004591 ORTHO05D005749 5.6e-63 244.6 153 82.4
Duzib052G0124 Durio zibethinus HOM05D004591 ORTHO05D005749 7.3e-63 244.2 154 83.1
Eucgr.H03866 Eucalyptus grandis HOM05D004591 ORTHO05D005749 7.3e-63 244.2 153 81.7
Peaxi162Scf00386g00533 Petunia axillaris HOM05D004591 ORTHO05D005749 7.3e-63 244.2 154 83.1
Sabra08G0155500 Salix brachista HOM05D004591 ORTHO05D005749 7.3e-63 244.2 160 80.0
CSS0009969 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 9.5e-63 243.8 154 82.5
Phvul.003G102400 Phaseolus vulgaris HOM05D004591 ORTHO05D005749 9.5e-63 243.8 153 80.4
VMungo1215G2997 Vigna mungo HOM05D004591 ORTHO05D005749 9.5e-63 243.8 153 80.4
Dinv38310 Davidia involucrata HOM05D004591 ORTHO05D005749 1.2e-62 243.4 154 81.8
TAR636G0963 Trochodendron aralioides HOM05D004591 ORTHO05D005749 1.2e-62 243.4 153 81.0
GSVIVG01017781001 Vitis vinifera HOM05D004591 ORTHO05D005749 1.6e-62 243.0 153 81.0
Dinv44407 Davidia involucrata HOM05D004591 ORTHO05D005749 2.1e-62 242.7 154 81.8
HanXRQChr03g0080861 Helianthus annuus HOM05D004591 ORTHO05D005749 2.8e-62 242.3 156 81.4
Solyc01g067500.3 Solanum lycopersicum HOM05D004591 ORTHO05D005749 2.8e-62 242.3 154 82.5
Sopen01g029430 Solanum pennellii HOM05D004591 ORTHO05D005749 2.8e-62 242.3 154 82.5
TAR365G0597 Trochodendron aralioides HOM05D004591 ORTHO05D005749 2.8e-62 242.3 153 80.4
Aqoxy2G03072 Aquilegia oxysepala HOM05D004591 ORTHO05D005749 3.6e-62 241.9 132 88.6
Glyma.07G250200 Glycine max HOM05D004591 ORTHO05D005749 3.6e-62 241.9 155 80.0
Nitab4.5_0000644g0140 Nicotiana tabacum HOM05D004591 ORTHO05D005749 3.6e-62 241.9 155 81.9
Haze_01244 Corylus avellana HOM05D004591 ORTHO05D005749 4.7e-62 241.5 159 79.9
FvH4_4g17580 Fragaria vesca HOM05D004591 ORTHO05D005749 4.7e-62 241.5 155 82.6
Nn3g21355 Nelumbo nucifera HOM05D004591 ORTHO05D005749 4.7e-62 241.5 153 79.7
CAN.G580.3 Capsicum annuum HOM05D004591 ORTHO05D005749 6.2e-62 241.1 154 81.8
MELO3C006623.2 Cucumis melo HOM05D004591 ORTHO05D005749 8.0e-62 240.7 132 87.9
CsaV3_3G014300 Cucumis sativus L. HOM05D004591 ORTHO05D005749 8.0e-62 240.7 132 87.9
Glyma.17G024200 Glycine max HOM05D004591 ORTHO05D005749 8.0e-62 240.7 155 79.4
CDE12G0904 Ceratophyllum demersum HOM05D004591 ORTHO05D005749 1.4e-61 240.0 153 78.4
Lalb_Chr13g0303761 Lupinus albus HOM05D004591 ORTHO05D005749 1.4e-61 240.0 154 80.5
Sed0000507 Sechium edule HOM05D004591 ORTHO05D005749 1.4e-61 240.0 132 87.9
Nn4g25961 Nelumbo nucifera HOM05D004591 ORTHO05D005749 2.3e-61 239.2 132 87.9
EL10Ac3g06572 Beta vulgaris HOM05D004591 ORTHO05D005749 4.0e-61 238.4 154 80.5
CANSAT78G2472 Cannabis sativa HOM05D004591 ORTHO05D005749 6.8e-61 237.7 153 79.1
AL6G29850 Arabidopsis lyrata HOM05D004591 ORTHO05D005749 8.9e-61 237.3 154 80.5
arahy.Tifrunner.gnm1.ann1.7AW5Q0 Arachis hypogaea HOM05D004591 ORTHO05D005749 8.9e-61 237.3 165 75.8
arahy.Tifrunner.gnm1.ann1.Q8N8UE Arachis hypogaea HOM05D004591 ORTHO05D005749 8.9e-61 237.3 165 75.8
Carub.0006s1686 Capsella rubella HOM05D004591 ORTHO05D005749 8.9e-61 237.3 154 80.5
ECA240G1474 Erigeron canadensis HOM05D004591 ORTHO05D005749 8.9e-61 237.3 156 80.8
vmacro08109 Vaccinium macrocarpon HOM05D004591 ORTHO05D005749 8.9e-61 237.3 154 80.5
Cc03_g02140 Coffea canephora HOM05D004591 ORTHO05D005749 1.2e-60 236.9 158 78.5
Lj4g0005644 Lotus japonicus HOM05D004591 ORTHO05D005749 1.2e-60 236.9 153 79.7
SGA_v2.0_scaffold43G16263 Striga asiatica HOM05D004591 ORTHO05D005749 1.2e-60 236.9 153 81.7
CSS0050493 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 1.5e-60 236.5 161 78.9
AT5G18580 Arabidopsis thaliana HOM05D004591 ORTHO05D005749 2.0e-60 236.1 154 79.9
MSTRG.28019 Avicennia marina HOM05D004591 ORTHO05D005749 2.6e-60 235.7 153 80.4
Lj3A813T31 Lonicera japonica HOM05D004591 ORTHO05D005749 2.6e-60 235.7 133 89.5
THA.LOC104818847 Tarenaya hassleriana HOM05D004591 ORTHO05D005749 2.6e-60 235.7 154 79.9
Psat4g047160 Pisum sativum HOM05D004591 ORTHO05D005749 3.4e-60 235.3 155 80.0
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 5.8e-60 234.6 155 80.0
Rhsim04G0218600 Rhododendron simsii HOM05D004591 ORTHO05D005749 5.8e-60 234.6 132 88.6
PSO210G4745 Papaver somniferum HOM05D004591 ORTHO05D005749 7.5e-60 234.2 145 80.0
TWI53G0054 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 7.5e-60 234.2 133 86.5
TWI53G1348 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 7.5e-60 234.2 133 86.5
ClCG05G005920 Citrullus lanatus HOM05D004591 ORTHO05D005749 9.8e-60 233.8 134 85.8
Migut.N01937 Erythranthe guttata HOM05D004591 ORTHO05D005749 1.3e-59 233.4 153 79.7
TPR.G14635 Trifolium pratense HOM05D004591 ORTHO05D005749 1.3e-59 233.4 155 79.4
AUR62041198 Chenopodium quinoa HOM05D004591 ORTHO05D005749 2.2e-59 232.6 133 87.2
SalBow3G4019 Salvia bowleyana HOM05D004591 ORTHO05D005749 2.2e-59 232.6 131 89.3
Thhalv10013373m.g Eutrema salsugineum HOM05D004591 ORTHO05D005749 2.9e-59 232.3 154 78.6
Lsat_1_v5_gn_5_52860 Lactuca sativa HOM05D004591 ORTHO05D005749 3.7e-59 231.9 156 78.2
MBI18_g01976_MAGBIO Magnolia biondii HOM05D004591 ORTHO05D005749 3.7e-59 231.9 159 77.4
BcaB05g23341 Brassica carinata HOM05D004591 ORTHO05D005749 8.3e-59 230.7 154 78.6
Lj4g0023442 Lotus japonicus HOM05D004591 ORTHO05D005749 8.3e-59 230.7 153 78.4
Medtr4g119230 Medicago truncatula HOM05D004591 ORTHO05D005749 8.3e-59 230.7 155 78.7
BcaC03g13610 Brassica carinata HOM05D004591 ORTHO05D005749 1.1e-58 230.3 156 77.6
BcaB01g05264 Brassica carinata HOM05D004591 ORTHO05D005749 1.9e-58 229.6 154 77.3
unitig_578.g16759 Utricularia gibba HOM05D004591 ORTHO05D005749 1.9e-58 229.6 153 78.4
C02p10040 Brassica napus HOM05D004591 ORTHO05D005749 2.4e-58 229.2 156 76.9
Sp6g25750 Schrenkiella parvula HOM05D004591 ORTHO05D005749 2.4e-58 229.2 154 77.3
A02p05010 Brassica napus HOM05D004591 ORTHO05D005749 3.2e-58 228.8 156 76.9
CARHR194440 Cardamine hirsuta HOM05D004591 ORTHO05D005749 1.6e-57 226.5 154 76.6
HPP92_016927 Vanilla planifolia HOM05D004591 ORTHO05D005749 2.7e-57 225.7 154 74.7
TWI09G1039 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 7.8e-57 224.2 133 84.2
AUR62043784 Chenopodium quinoa HOM05D004591 ORTHO05D005749 1.3e-56 223.4 148 78.4
Ah.13g074560 Amaranthus hybridus HOM05D004591 ORTHO05D005749 1.7e-56 223.0 168 71.4
BolC2t06906H Brassica oleracea HOM05D004591 ORTHO05D005749 1.7e-56 223.0 164 73.8
A03p08950 Brassica napus HOM05D004591 ORTHO05D005749 6.6e-56 221.1 164 72.6
BraA02t05460Z Brassica rapa HOM05D004591 ORTHO05D005749 6.6e-56 221.1 165 72.7
DCAR_002455 Daucus carota HOM05D004591 ORTHO05D005749 6.6e-56 221.1 153 74.5
DCAR_002457 Daucus carota HOM05D004591 ORTHO05D005749 6.6e-56 221.1 153 74.5
BcaB08g36661 Brassica carinata HOM05D004591 ORTHO05D005749 1.9e-55 219.5 153 75.2
A10p20980 Brassica napus HOM05D004591 ORTHO05D005749 4.3e-55 218.4 154 73.4
BraA10t44163Z Brassica rapa HOM05D004591 ORTHO05D005749 4.3e-55 218.4 154 73.4
Oeu062899.1 Olea europaea HOM05D004591 ORTHO05D005749 5.6e-55 218.0 189 63.5
FAN07G0597 Fragaria x ananassa HOM05D004591 ORTHO05D005749 7.3e-55 217.6 188 67.0
FAN12G0549 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.6e-54 216.5 155 76.8
FAN12G3150 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.6e-54 216.5 155 76.8
BraA03t10221Z Brassica rapa HOM05D004591 ORTHO05D005749 2.1e-54 216.1 177 67.2
FAN17G1172 Fragaria x ananassa HOM05D004591 ORTHO05D005749 3.6e-54 215.3 174 71.3
ATR0706G153 Amborella trichopoda HOM05D004591 ORTHO05D005749 1.5e-52 209.9 145 74.5
Oeu044779.2 Olea europaea HOM05D004591 ORTHO05D005749 2.9e-51 205.7 179 62.6
Os05g0149800 Oryza sativa ssp. japonica HOM05D004591 ORTHO05D005749 6.4e-51 204.5 136 75.0
C03p10420 Brassica napus HOM05D004591 ORTHO05D005749 2.4e-50 202.6 154 70.8
BolC3t13524H Brassica oleracea HOM05D004591 ORTHO05D005749 3.5e-49 198.7 154 70.1
Zm00001eb308510 Zea mays HOM05D004591 ORTHO05D005749 8.6e-48 194.1 130 76.2
Zm00001eb083940 Zea mays HOM05D004591 ORTHO05D005749 1.8e-45 186.4 109 82.6
Aa31LG11G11040 Aethionema arabicum HOM05D004591 ORTHO05D005749 1.5e-44 183.3 166 63.3
Mapoly0035s0147 Marchantia polymorpha HOM05D004591 ORTHO05D005749 1.4e-42 176.8 137 63.5
HanXRQChr06g0174301 Helianthus annuus HOM05D004591 ORTHO05D005749 3.2e-42 175.6 136 66.9
SMO118G0294 Selaginella moellendorffii HOM05D004591 ORTHO05D005749 9.3e-42 174.1 132 64.4
ECA246G1561 Erigeron canadensis HOM05D004591 ORTHO05D005749 1.6e-41 173.3 112 77.7
Cpa.g.sc16.134 Carica papaya HOM05D004591 ORTHO05D005749 1.5e-39 166.8 108 79.6
BolC9t58658H Brassica oleracea HOM05D004591 ORTHO05D005749 1.1e-37 160.6 96 81.2
AagrBONN_evm.TU.Sc2ySwM_228.5538 Anthoceros agrestis HOM05D004591 ORTHO05D005749 2.6e-36 156.0 131 57.3
HanXRQChr12g0380821 Helianthus annuus HOM05D004591 ORTHO05D005749 2.4e-34 149.4 172 50.0
Zm00001eb418170 Zea mays HOM05D004591 ORTHO05D005749 1.0e-32 144.1 148 56.8
BcaC04g18665 Brassica carinata HOM05D004591 ORTHO05D005749 1.3e-32 143.7 86 80.2
C09p57910 Brassica napus HOM05D004591 ORTHO05D005749 3.9e-32 142.1 87 78.2
Psat4g047200 Pisum sativum HOM05D004591 ORTHO05D005749 4.3e-31 138.7 159 54.7
Pp3c6_6290 Physcomitrium patens HOM05D004591 ORTHO05D005749 1.4e-26 123.6 106 57.5
DCAR_002452 Daucus carota HOM05D004591 ORTHO05D005749 6.0e-25 118.2 137 51.1
COL.COLO4_13908 Corchorus olitorius HOM05D004591 ORTHO05D005749 1.1e-23 114.0 76 77.6
Prupe.1G140000 Prunus persica HOM05D004591 ORTHO05D005749 2.5e-23 112.8 76 76.3
Sc25g0004740 Simmondsia chinensis HOM05D004591 ORTHO05D005749 1.3e-22 110.5 76 76.3
PSO832G1860 Papaver somniferum HOM05D004591 ORTHO05D005749 2.1e-22 109.8 72 77.8
Lsat_1_v5_gn_3_27301 Lactuca sativa HOM05D004591 ORTHO05D005749 4.5e-20 102.1 76 69.7
CBR_g7999 Chara braunii HOM05D004591 ORTHO05D005749 1.3e-14 84.0 109 39.4
Actinidia40243 Actinidia chinensis HOM05D004591 ORTHO05D005749 6.9e-13 78.2 55 70.9
DCAR_001163 Daucus carota HOM05D008184 ORTHO05D002997 1.6e-09 67.0 50 64.0
Zm00001eb354190 Zea mays HOM05D004591 ORTHO05D005749 2.7e-09 66.2 51 66.7
SEGI_41070 Sequoiadendron giganteum HOM05D004591 ORTHO05D005749 4.6e-09 65.5 54 61.1
Lsat_1_v5_gn_1_116641 Lactuca sativa HOM05D004591 ORTHO05D005749 5.7e-07 58.5 54 55.6


User provided reference genes

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