Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G077122 Manihot esculenta HOM05D006669 ORTHO05D008440 1.2e-94 349.7 168 100.0
Manes.01G047215 Manihot esculenta HOM05D006669 ORTHO05D008440 8.4e-80 300.4 143 100.0
Manes.01G247604 Manihot esculenta HOM05D006669 ORTHO05D008440 1.4e-50 203.4 102 98.0
Manes.12G112200 Manihot esculenta HOM05D006669 ORTHO05D008440 2.4e-18 96.3 40 97.5
CAN.G1290.5 Capsicum annuum HOM05D006669 ORTHO05D008440 2.0e-17 93.2 69 62.3
Nitab4.5_0001772g0050 Nicotiana tabacum HOM05D006669 ORTHO05D008440 2.0e-17 93.2 58 69.0
Potri.007G052400 Populus trichocarpa HOM05D006669 ORTHO05D008440 2.7e-17 92.8 58 69.0
Nitab4.5_0004400g0020 Nicotiana tabacum HOM05D006669 ORTHO05D008440 3.5e-17 92.4 117 46.2
Solyc02g064740.3 Solanum lycopersicum HOM05D006669 ORTHO05D008440 3.5e-17 92.4 69 62.3
Sopen02g014840 Solanum pennellii HOM05D006669 ORTHO05D008440 3.5e-17 92.4 69 62.3
Actinidia16443 Actinidia chinensis HOM05D006669 ORTHO05D008440 5.9e-17 91.7 58 63.8
Actinidia21236 Actinidia chinensis HOM05D006669 ORTHO05D008440 5.9e-17 91.7 58 63.8
Duzib147G0464 Durio zibethinus HOM05D006669 ORTHO05D008440 5.9e-17 91.7 58 65.5
Gohir.A02G153400 Gossypium hirsutum HOM05D006669 ORTHO05D008440 1.3e-16 90.5 58 67.2
Gohir.D03G027000 Gossypium hirsutum HOM05D006669 ORTHO05D008440 1.3e-16 90.5 58 67.2
Gorai.003G028700 Gossypium raimondii HOM05D006669 ORTHO05D008440 1.3e-16 90.5 58 67.2
THA.LOC104807621 Tarenaya hassleriana HOM05D006669 ORTHO05D008440 1.3e-16 90.5 58 65.5
PGSC0003DMG402013020 Solanum tuberosum HOM05D006669 ORTHO05D008440 1.7e-16 90.1 69 60.9
CANSAT01G1540 Cannabis sativa HOM05D006669 ORTHO05D008440 2.3e-16 89.7 60 63.3
CARHR245880 Cardamine hirsuta HOM05D006669 ORTHO05D008440 2.3e-16 89.7 58 63.8
Haze_15316 Corylus avellana HOM05D006669 ORTHO05D008440 2.3e-16 89.7 58 67.2
Thhalv10024891m.g Eutrema salsugineum HOM05D006669 ORTHO05D008440 2.9e-16 89.4 58 65.5
Aa31LG6G14350 Aethionema arabicum HOM05D006669 ORTHO05D008440 3.8e-16 89.0 40 85.0
C03p79320 Brassica napus HOM05D006669 ORTHO05D008440 3.8e-16 89.0 58 63.8
Sabra07G0046000 Salix brachista HOM05D006669 ORTHO05D008440 3.8e-16 89.0 58 65.5
Atru.chr3.203 Acer truncatum HOM05D006669 ORTHO05D008440 5.0e-16 88.6 59 64.4
BcaC01g00401 Brassica carinata HOM05D006669 ORTHO05D008440 5.0e-16 88.6 58 62.1
A08p22660 Brassica napus HOM05D006669 ORTHO05D008440 5.0e-16 88.6 58 62.1
BolC3t20175H Brassica oleracea HOM05D006669 ORTHO05D008440 5.0e-16 88.6 58 62.1
BraA08t34233Z Brassica rapa HOM05D006669 ORTHO05D008440 5.0e-16 88.6 58 62.1
Rhsim08G0095700 Rhododendron simsii HOM05D006669 ORTHO05D008440 5.0e-16 88.6 58 65.5
Sp7g35160 Schrenkiella parvula HOM05D006669 ORTHO05D008440 6.6e-16 88.2 58 63.8
Cpa.g.sc6.52 Carica papaya HOM05D006669 ORTHO05D008440 8.6e-16 87.8 58 65.5
CiPaw.02G004600 Carya illinoinensis HOM05D006669 ORTHO05D008440 1.1e-15 87.4 63 61.9
AUR62003969 Chenopodium quinoa HOM05D006669 ORTHO05D008440 1.5e-15 87.0 71 52.1
TWI53G1681 Tripterygium wilfordii HOM05D006669 ORTHO05D008440 1.5e-15 87.0 58 62.1
Ca_24710_v3 Cicer arietinum L. HOM05D006669 ORTHO05D008440 1.9e-15 86.7 40 80.0
Cc07_g06760 Coffea canephora HOM05D006669 ORTHO05D008440 1.9e-15 86.7 58 63.8
Oeu040598.1 Olea europaea HOM05D006669 ORTHO05D008440 1.9e-15 86.7 58 65.5
CSS0011361 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 2.5e-15 86.3 57 63.2
CSS0012464 Camellia sinensis var. sinensis HOM05D006669 ORTHO05D008440 2.5e-15 86.3 57 63.2
Ciclev10027520m.g Citrus clementina HOM05D006669 ORTHO05D008440 2.5e-15 86.3 39 84.6
Eucgr.I00723 Eucalyptus grandis HOM05D006669 ORTHO05D008440 2.5e-15 86.3 60 61.7
BcaB03g12341 Brassica carinata HOM05D006669 ORTHO05D008440 4.3e-15 85.5 58 60.3
Carub.0007s0280 Capsella rubella HOM05D006669 ORTHO05D008440 4.3e-15 85.5 58 60.3
COL.COLO4_11531 Corchorus olitorius HOM05D006669 ORTHO05D008440 4.3e-15 85.5 39 84.6
Lj4C159G4 Lonicera japonica HOM05D006669 ORTHO05D008440 4.3e-15 85.5 39 84.6
MD15G1293100 Malus domestica HOM05D006669 ORTHO05D008440 4.3e-15 85.5 39 87.2
TAR381G0156 Trochodendron aralioides HOM05D006669 ORTHO05D008440 4.3e-15 85.5 39 84.6
ATR0030G057 Amborella trichopoda HOM05D006669 ORTHO05D008440 5.6e-15 85.1 62 59.7
AL7G13310 Arabidopsis lyrata HOM05D006669 ORTHO05D008440 7.3e-15 84.7 58 58.6
AT4G37480 Arabidopsis thaliana HOM05D006669 ORTHO05D008440 7.3e-15 84.7 58 58.6
FAN28G0180 Fragaria x ananassa HOM05D006669 ORTHO05D008440 9.5e-15 84.3 58 60.3
Lalb_Chr09g0323441 Lupinus albus HOM05D006669 ORTHO05D008440 9.5e-15 84.3 40 80.0
RcHm_v2.0_Chr2g0107341 Rosa chinensis HOM05D006669 ORTHO05D008440 9.5e-15 84.3 58 60.3
TPR.G20965 Trifolium pratense HOM05D006669 ORTHO05D008440 9.5e-15 84.3 57 59.6
SGA_v2.0_scaffold15G07411 Striga asiatica HOM05D006669 ORTHO05D008440 1.2e-14 84.0 58 62.1
Medtr5g016110 Medicago truncatula HOM05D006669 ORTHO05D008440 2.1e-14 83.2 40 77.5
Psat0s1712g0160 Pisum sativum HOM05D006669 ORTHO05D008440 2.1e-14 83.2 40 77.5
QL06p039919 Quercus lobata HOM05D006669 ORTHO05D008440 2.1e-14 83.2 39 84.6
GSVIVG01000155001 Vitis vinifera HOM05D006669 ORTHO05D008440 2.8e-14 82.8 39 79.5
ClCG01G017320 Citrullus lanatus HOM05D006669 ORTHO05D008440 3.6e-14 82.4 54 63.0
ECA246G2447 Erigeron canadensis HOM05D006669 ORTHO05D008440 3.6e-14 82.4 58 58.6
MELO3C007610.2 Cucumis melo HOM05D006669 ORTHO05D008440 4.7e-14 82.0 39 79.5
CsaV3_6G043850 Cucumis sativus L. HOM05D006669 ORTHO05D008440 4.7e-14 82.0 39 79.5
Aqoxy6G02742 Aquilegia oxysepala HOM05D006669 ORTHO05D008440 6.1e-14 81.6 39 79.5
AUR62040277 Chenopodium quinoa HOM05D006669 ORTHO05D008440 6.1e-14 81.6 57 57.9
HanXRQChr12g0376911 Helianthus annuus HOM05D006669 ORTHO05D008440 6.1e-14 81.6 58 53.4
Glyma.01G191500 Glycine max HOM05D006669 ORTHO05D008440 8.0e-14 81.3 40 75.0
Glyma.11G050600 Glycine max HOM05D006669 ORTHO05D008440 8.0e-14 81.3 40 75.0
EL10Ac6g15658 Beta vulgaris HOM05D006669 ORTHO05D008440 1.0e-13 80.9 58 56.9
Os03g0761700 Oryza sativa ssp. japonica HOM05D006669 ORTHO05D008440 1.0e-13 80.9 39 82.1
Migut.H00372 Erythranthe guttata HOM05D006669 ORTHO05D008440 1.8e-13 80.1 40 75.0
FAN19G2999 Fragaria x ananassa HOM05D006669 ORTHO05D008440 2.3e-13 79.7 39 74.4
FAN26G1063 Fragaria x ananassa HOM05D006669 ORTHO05D008440 2.3e-13 79.7 39 74.4
Phvul.002G013400 Phaseolus vulgaris HOM05D006669 ORTHO05D008440 2.3e-13 79.7 40 75.0
SalBow6G5653 Salvia bowleyana HOM05D006669 ORTHO05D008440 2.3e-13 79.7 57 61.4
SEGI_19371 Sequoiadendron giganteum HOM05D006669 ORTHO05D008440 2.3e-13 79.7 77 46.8
Sed0019482 Sechium edule HOM05D006669 ORTHO05D008440 4.0e-13 79.0 58 53.4
Lj2g0024438 Lotus japonicus HOM05D006669 ORTHO05D008440 5.2e-13 78.6 40 72.5
HPP92_000758 Vanilla planifolia HOM05D006669 ORTHO05D008440 8.9e-13 77.8 57 56.1
arahy.Tifrunner.gnm1.ann1.37Y375 Arachis hypogaea HOM05D006669 ORTHO05D008440 2.0e-12 76.6 40 72.5
arahy.Tifrunner.gnm1.ann1.QDP4K1 Arachis hypogaea HOM05D006669 ORTHO05D008440 2.0e-12 76.6 40 72.5
Lsat_1_v5_gn_3_88261 Lactuca sativa HOM05D006669 ORTHO05D008440 3.4e-12 75.9 58 53.4
SEGI_27298 Sequoiadendron giganteum HOM05D006669 ORTHO05D008440 5.7e-12 75.1 40 67.5
Hma1.2p1_1506F.1_g287550 Hydrangea macrophylla HOM05D006669 ORTHO05D008440 8.3e-11 71.2 48 64.6
unitig_62.g23421 Utricularia gibba HOM05D006669 ORTHO05D008440 9.2e-10 67.8 69 49.3


User provided reference genes

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