Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 6.9e-51 203.8 108 100.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.0e-30 135.2 80 92.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 6.5e-17 90.9 80 68.8
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.1e-16 90.1 80 67.5
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 4.2e-16 88.2 78 67.9
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 5.5e-16 87.8 77 66.2
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 5.5e-16 87.8 80 65.0
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.5e-16 87.8 80 65.0
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 7.2e-16 87.4 77 67.5
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 7.2e-16 87.4 78 66.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 7.2e-16 87.4 80 65.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.2e-16 87.4 82 65.9
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 3.6e-15 85.1 78 64.1
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.7e-15 84.7 78 66.7
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 8.0e-15 84.0 80 63.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.0e-14 83.6 80 60.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.4e-14 83.2 77 64.9
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.8e-14 82.8 81 58.0
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.3e-14 82.4 80 60.0
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 3.0e-14 82.0 79 62.0
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.9e-14 81.6 91 56.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.2e-14 81.3 79 62.0
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 5.2e-14 81.3 79 62.0
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.5e-13 79.7 75 62.7
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.3e-13 78.6 81 60.5
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 4.4e-13 78.2 78 64.1
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.4e-13 77.4 78 62.8
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 7.4e-13 77.4 77 62.3
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 9.7e-13 77.0 79 57.0
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.7e-12 76.3 77 63.6
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.7e-12 76.3 73 67.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.7e-12 76.3 80 62.5
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.7e-12 76.3 86 54.7
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.2e-12 75.9 75 62.7
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.8e-12 74.7 80 56.2
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 6.3e-12 74.3 86 53.5
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 6.3e-12 74.3 86 53.5
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 6.3e-12 74.3 84 53.6
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.3e-12 74.3 77 55.8
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 8.2e-12 73.9 83 55.4
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 8.2e-12 73.9 86 53.5
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 8.2e-12 73.9 79 59.5
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 8.2e-12 73.9 80 56.2
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.1e-11 73.6 82 54.9
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.1e-11 73.6 80 55.0
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.1e-11 73.6 81 61.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-11 73.2 81 58.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.4e-11 73.2 86 51.2
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.4e-11 73.2 83 56.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.4e-11 73.2 78 55.1
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.4e-11 73.2 81 59.3
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.4e-11 73.2 80 56.2
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 51.2
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 51.2
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 52.3
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 51.2
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 51.2
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 51.2
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.1e-11 72.0 86 52.3
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 4.1e-11 71.6 86 52.3
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 4.1e-11 71.6 86 50.0
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.1e-11 71.6 81 56.8
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.1e-11 71.6 81 56.8
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 5.3e-11 71.2 80 57.5
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.3e-11 71.2 77 59.7
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 9.1e-11 70.5 105 47.6
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 9.1e-11 70.5 80 50.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 9.1e-11 70.5 81 59.3
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.6e-10 69.7 86 48.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.0e-10 69.3 78 51.3
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.0e-10 69.3 78 51.3
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.6e-10 68.9 85 55.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.5e-10 68.6 78 56.4
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 4.5e-10 68.2 80 55.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 5.9e-10 67.8 79 53.2
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 7.7e-10 67.4 79 54.4
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 7.7e-10 67.4 68 63.2
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.0e-09 67.0 81 51.9
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.0e-09 67.0 75 56.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.3e-09 66.6 85 52.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.3e-09 66.6 78 56.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.7e-09 66.2 81 55.6
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.2e-09 65.9 71 59.2
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.2e-09 65.9 79 53.2
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.2e-09 65.9 67 58.2
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.9e-09 65.5 78 51.3
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 3.8e-09 65.1 79 57.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 6.5e-09 64.3 80 51.2
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 8.5e-09 63.9 105 44.8
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 8.5e-09 63.9 80 53.8
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.9e-08 62.8 44 75.0
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.9e-08 62.8 44 75.0
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 3.2e-08 62.0 81 50.6
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 4.2e-08 61.6 44 72.7
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.5e-08 61.2 67 52.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 7.2e-08 60.8 83 47.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.6e-07 59.7 95 44.2
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.1e-07 59.3 75 53.3
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.1e-07 59.3 85 49.4
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.6e-07 58.5 78 51.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.7e-07 58.2 95 44.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 8.0e-07 57.4 92 45.7
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 8.0e-07 57.4 83 45.8
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.0e-07 57.4 77 42.9
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.0e-06 57.0 51 62.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.4e-06 56.6 89 44.9
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.4e-06 56.6 88 45.5
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.4e-06 56.6 77 48.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.8e-06 56.2 94 42.6
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.8e-06 56.2 67 49.3
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.3e-06 55.8 97 40.2
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 3.0e-06 55.5 95 44.2
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 3.0e-06 55.5 90 45.6
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 3.0e-06 55.5 95 44.2
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 3.0e-06 55.5 90 45.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.0e-06 55.5 92 43.5
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 4.0e-06 55.1 80 48.8
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 5.2e-06 54.7 85 47.1
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 5.2e-06 54.7 94 42.6
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 6.7e-06 54.3 57 57.9
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 6.7e-06 54.3 94 41.5
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 6.7e-06 54.3 94 41.5
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.7e-06 54.3 91 44.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 8.8e-06 53.9 92 44.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 8.8e-06 53.9 79 45.6
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 8.8e-06 53.9 77 49.4


User provided reference genes

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