Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 9.9e-247 856.3 417 100.0
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-238 829.3 417 96.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.8e-217 758.4 417 88.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.7e-210 734.2 414 84.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.1e-209 732.3 414 84.5
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.1e-208 729.9 436 81.2
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.0e-208 726.9 414 82.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.9e-207 724.2 414 82.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.7e-206 722.6 414 83.6
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.2e-206 722.2 414 84.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 5.0e-206 721.1 414 82.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-205 719.9 414 82.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-205 719.9 414 83.1
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 82.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 82.4
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 82.6
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.5e-205 717.6 414 83.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.2e-205 717.2 414 82.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 9.3e-205 716.8 414 82.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.6e-204 716.1 414 82.6
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.7e-204 715.3 414 82.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-203 713.4 414 81.2
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-203 713.4 414 81.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.0e-203 713.4 414 81.9
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.3e-203 713.0 414 81.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.3e-203 712.2 414 80.9
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 6.7e-203 710.7 414 81.6
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 6.7e-203 710.7 431 78.9
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-202 709.9 414 82.1
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.5e-202 709.5 434 80.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 4.3e-202 708.0 414 81.2
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.3e-202 708.0 414 80.7
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.8e-201 704.5 414 80.2
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.4e-200 703.0 414 80.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.4e-200 702.2 431 80.0
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 4.1e-200 701.4 414 80.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 5.3e-200 701.0 414 79.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 9.0e-200 700.3 414 80.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.5e-199 699.5 414 78.7
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.6e-199 698.7 414 79.5
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 4.5e-199 698.0 414 79.7
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 7.7e-199 697.2 414 80.2
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.0e-198 696.8 414 80.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 79.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.2e-198 695.7 414 79.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.2e-198 695.7 412 79.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.9e-198 695.3 412 78.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 5.0e-198 694.5 414 79.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 5.0e-198 694.5 414 78.0
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.5e-198 694.1 414 79.0
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.5e-198 694.1 414 80.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.5e-198 693.7 414 80.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.1e-197 693.3 409 79.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.9e-197 692.6 414 78.3
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.9e-197 692.6 414 80.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.9e-197 692.6 414 80.7
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.9e-197 692.6 414 79.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.2e-196 689.9 414 77.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.1e-196 689.1 414 79.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 78.4
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 3.6e-196 688.3 412 77.7
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 4.6e-196 688.0 414 80.4
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 4.6e-196 688.0 414 79.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 6.1e-196 687.6 409 80.4
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 7.9e-196 687.2 414 77.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 7.9e-196 687.2 414 77.5
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.9e-196 687.2 414 79.5
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-195 686.4 428 78.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.8e-195 686.0 414 77.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.7e-195 684.1 414 77.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.1e-194 683.3 414 77.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.0e-194 682.6 414 79.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 4.3e-194 681.4 412 78.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.3e-194 681.4 414 78.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.3e-194 681.4 414 78.7
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 4.3e-194 681.4 414 78.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 5.7e-194 681.0 414 77.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 9.7e-194 680.2 414 77.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.3e-193 679.9 414 77.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.3e-193 679.9 414 77.1
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.3e-193 679.9 414 78.5
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 430 76.5
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.7e-193 678.3 414 78.3
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.8e-193 677.9 414 79.0
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.3e-193 677.6 430 76.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 8.2e-193 677.2 414 77.3
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.4e-192 676.4 414 76.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 413 77.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.8e-192 676.0 414 78.3
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 4.1e-192 674.9 414 76.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.9e-192 674.1 430 76.5
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 9.1e-192 673.7 454 71.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.5e-191 671.4 413 77.5
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 5.9e-191 671.0 412 75.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-190 668.7 447 72.0
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.9e-190 668.7 413 77.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 5.0e-190 667.9 414 75.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 6.5e-190 667.5 414 76.1
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.5e-189 665.6 413 76.3
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.5e-189 664.5 414 75.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.1e-188 662.5 414 75.1
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.7e-188 662.1 416 75.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.1e-188 661.0 414 75.8
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 7.9e-188 660.6 415 75.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 7.9e-188 660.6 415 74.9
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.4e-187 659.8 414 73.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.9e-187 658.3 403 79.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 2.2e-185 652.5 415 74.9
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.1e-184 648.3 414 76.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 5.3e-184 647.9 410 74.9
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.0e-183 646.0 412 74.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.6e-183 645.6 416 73.1
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.5e-183 644.8 418 73.4
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.9e-183 644.4 411 74.5
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.0e-182 643.7 497 64.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.3e-182 643.3 412 73.8
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.7e-182 642.9 357 84.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 6.5e-182 641.0 414 75.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.5e-181 639.0 414 72.0
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.7e-180 635.6 418 72.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.1e-180 634.4 406 73.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.0e-179 633.6 414 74.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.3e-177 626.7 414 74.2
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.3e-177 624.4 410 73.4
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.2e-175 620.2 407 71.7
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.0e-175 619.4 411 69.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.5e-175 618.6 411 71.3
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.7e-175 617.5 366 79.0
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.9e-174 615.5 419 69.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.2e-169 599.4 411 69.1
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 8.3e-169 597.4 363 77.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 4.1e-168 595.1 356 77.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.9e-165 586.3 414 70.0
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.1e-164 582.8 339 79.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.8e-162 573.9 339 79.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.3e-158 563.5 410 63.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.7e-156 555.1 431 66.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 4.3e-149 531.9 411 60.3
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 8.9e-147 524.2 410 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.4e-146 521.9 410 61.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.2e-145 519.6 411 62.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.6e-138 496.1 291 82.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.4e-137 491.5 339 69.9
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.3e-133 478.8 422 55.2
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.8e-130 468.4 315 73.0
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 6.2e-124 448.4 301 74.4
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.6e-111 407.1 223 83.9
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 4.6e-111 405.6 291 69.4
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.2e-106 391.0 419 48.7
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 5.8e-106 388.7 235 77.9
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.3e-102 377.5 498 41.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.6e-100 370.5 420 46.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.4e-99 367.5 406 46.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.1e-96 355.1 198 82.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.0e-94 349.7 198 81.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 5.1e-94 349.0 244 67.6
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 5.0e-81 305.8 219 68.9
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 5.5e-72 275.8 226 64.6
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-67 261.2 172 72.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.7e-65 254.2 258 53.1
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-62 244.6 160 73.1
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.3e-61 240.0 178 66.9
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-59 232.6 167 68.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.0e-58 230.7 153 70.6
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 3.8e-57 226.5 229 53.7
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.0e-54 218.4 128 80.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.6e-53 213.8 124 79.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.7e-52 209.9 181 59.1
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-51 208.0 333 39.6
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.6e-50 204.5 121 76.9
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.2e-48 196.8 124 75.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.2e-48 195.7 339 38.6
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.4e-37 159.8 122 59.0
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.2e-35 153.7 95 76.8
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 4.7e-31 139.8 85 78.8
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.2e-29 135.2 122 57.4
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 4.1e-27 126.7 66 83.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.3e-25 121.7 71 78.9
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 7.3e-16 89.4 86 47.7
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.6e-15 88.2 97 43.3
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.2e-14 83.2 57 66.7
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-09 68.2 59 61.0
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 3.3e-08 63.9 35 77.1
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 9.6e-08 62.4 303 23.8
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.4e-06 57.8 58 48.3


User provided reference genes

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