Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.8e-247 857.1 417 100.0
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.4e-239 830.9 417 96.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-220 769.6 417 89.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.9e-214 747.7 414 85.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.7e-212 741.9 436 82.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.1e-210 736.5 414 84.3
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.7e-210 734.2 414 83.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.2e-209 730.3 414 84.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 8.2e-209 730.3 414 83.6
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.1e-208 728.0 414 84.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 6.9e-208 727.2 414 83.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.9e-208 727.2 414 82.9
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-207 726.5 414 83.6
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.5e-207 726.1 414 82.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.5e-207 724.5 414 82.9
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.5e-207 724.5 414 82.9
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 7.6e-207 723.8 414 82.6
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.3e-206 723.0 414 82.6
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.7e-206 722.6 414 82.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.2e-206 722.2 414 82.4
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.9e-206 721.8 414 82.9
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-205 719.5 414 83.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.5e-205 718.8 414 82.1
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 3.2e-205 718.4 431 79.6
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 81.4
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.5e-205 717.6 414 82.9
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-204 716.5 414 80.9
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-204 716.5 414 80.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.1e-204 715.7 414 80.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.7e-204 715.3 434 80.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 7.9e-204 713.8 414 81.2
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.3e-203 713.0 414 80.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.8e-203 712.6 414 80.9
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.1e-202 709.9 414 80.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 4.3e-202 708.0 414 80.9
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 5.7e-202 707.6 414 80.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 7.4e-202 707.2 414 80.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.7e-202 706.8 414 79.5
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.3e-201 706.4 431 79.6
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.8e-201 705.3 414 78.7
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.3e-201 704.1 414 81.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.4e-200 703.0 414 79.2
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.4e-200 702.2 414 80.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.1e-200 701.8 414 80.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 5.3e-200 701.0 414 79.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 6.9e-200 700.7 414 80.7
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 6.9e-200 700.7 412 79.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 6.9e-200 700.7 412 78.4
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 9.0e-200 700.3 414 78.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 9.0e-200 700.3 409 79.7
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-199 699.9 414 80.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.5e-199 699.5 414 80.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.0e-199 699.1 414 78.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.6e-199 698.7 414 78.0
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.6e-199 698.7 414 80.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 2.6e-199 698.7 414 80.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.5e-199 698.0 414 79.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.9e-199 697.6 414 80.0
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.3e-198 696.4 414 78.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 79.2
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 78.5
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.9e-198 695.3 414 78.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 3.8e-198 694.9 414 78.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 6.5e-198 694.1 416 78.4
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.5e-198 693.7 414 79.7
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.5e-198 693.7 414 80.2
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.4e-197 693.0 414 79.7
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.5e-197 692.2 412 77.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 4.2e-197 691.4 414 78.0
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.5e-197 691.0 414 77.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 9.4e-197 690.3 412 79.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.4e-197 690.3 430 77.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.2e-196 689.9 414 78.0
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.1e-196 689.1 430 77.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.7e-196 688.7 409 80.2
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.6e-196 688.3 414 77.1
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.6e-196 688.0 428 77.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 4.6e-196 688.0 414 77.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.1e-196 687.6 414 77.1
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.1e-196 687.6 414 80.0
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.9e-196 687.2 414 79.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.8e-195 686.0 414 78.3
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-195 685.6 430 77.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.3e-195 685.6 414 77.1
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 6.7e-195 684.1 414 78.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.7e-195 684.1 414 79.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 6.7e-195 684.1 414 79.0
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 8.8e-195 683.7 414 78.3
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.5e-194 682.9 414 77.1
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.3e-194 681.4 414 78.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.7e-194 680.2 413 77.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.3e-193 679.9 416 77.2
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.3e-193 679.9 414 78.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.7e-193 679.5 414 77.8
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.3e-193 677.6 414 77.3
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 6.3e-193 677.6 412 75.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.3e-193 677.6 413 78.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.4e-192 676.4 415 76.4
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-192 676.4 413 77.7
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.1e-192 674.9 414 76.1
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.1e-192 674.9 415 76.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 9.1e-192 673.7 454 71.6
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-191 672.2 447 71.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.3e-190 669.8 413 76.5
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.8e-190 668.3 415 76.4
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.0e-190 667.9 414 75.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.5e-189 665.6 414 73.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.7e-188 662.1 403 80.1
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.2e-185 652.5 418 73.7
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 3.7e-185 651.7 412 74.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 6.3e-185 651.0 410 74.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-184 650.2 414 75.8
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.4e-184 649.0 412 74.0
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.3e-184 647.9 411 74.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 7.0e-184 647.5 416 73.1
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.2e-183 646.7 414 75.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.5e-183 645.2 414 72.2
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 5.9e-183 644.4 418 72.7
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 7.7e-183 644.0 497 63.6
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-182 643.3 357 84.3
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 9.4e-181 637.1 406 72.9
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 3.6e-180 635.2 414 74.4
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 8.8e-179 630.6 410 73.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.3e-178 628.6 411 70.3
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.4e-178 628.2 411 72.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.3e-177 626.7 414 73.9
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.8e-176 622.9 407 71.5
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.7e-174 616.3 366 78.4
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 4.2e-173 611.7 419 68.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 8.0e-172 607.4 363 78.0
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.8e-171 604.0 411 69.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.5e-170 600.9 414 71.3
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.7e-167 592.4 356 77.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 4.7e-164 581.6 339 78.8
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.3e-161 573.5 339 79.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.7e-158 563.1 410 63.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-157 560.5 431 66.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.1e-149 533.9 411 60.1
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.2e-148 528.1 411 63.3
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 6.2e-148 528.1 410 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 7.5e-146 521.2 410 60.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.6e-140 502.3 298 80.9
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.2e-137 493.0 339 70.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 9.2e-136 487.6 422 56.2
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-129 467.2 315 72.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.4e-123 446.4 301 73.4
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 6.4e-113 411.8 223 84.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.4e-112 409.8 290 70.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.6e-106 389.8 419 48.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-105 385.6 235 76.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.6e-103 380.6 498 41.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.3e-102 377.5 406 47.5
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.1e-100 370.2 420 46.4
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.9e-96 357.1 244 68.9
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.6e-95 352.4 198 81.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.9e-93 347.1 198 80.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.2e-80 303.1 219 68.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 3.8e-73 279.6 216 66.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 7.0e-67 258.8 172 71.5
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-65 255.0 160 76.2
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.1e-64 251.5 258 51.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.3e-61 240.0 178 67.4
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-59 234.2 151 73.5
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-56 224.9 228 53.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.5e-56 224.6 153 68.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-54 217.2 181 60.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.0e-53 214.2 124 79.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.4e-53 213.0 333 40.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.4e-53 213.0 128 78.1
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.5e-50 203.0 121 75.2
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.5e-49 199.1 339 39.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.0e-46 191.8 124 73.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.3e-36 158.3 122 59.0
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 2.2e-36 157.5 95 77.9
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.3e-30 137.5 85 76.5
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.2e-29 135.2 122 57.4
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.1e-27 128.6 66 84.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.3e-25 121.7 71 78.9
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 5.6e-16 89.7 86 47.7
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.8e-15 87.4 97 42.3
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.1e-14 85.5 57 66.7
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.9e-12 77.4 59 67.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 8.7e-09 65.9 35 80.0
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.1e-08 65.5 58 53.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.1e-08 65.5 303 23.8


User provided reference genes

Program Settings