Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.7e-246 855.5 417 100.0
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.5e-221 770.8 417 89.0
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.3e-218 761.1 417 88.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.1e-210 736.5 415 83.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.5e-207 726.1 414 82.4
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.5e-207 724.5 415 83.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 5.9e-207 724.2 415 82.2
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.9e-207 724.2 415 82.7
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.0e-206 723.4 415 82.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.7e-206 722.6 415 82.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.2e-206 722.2 437 79.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.5e-206 720.7 415 81.4
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 8.4e-206 720.3 415 81.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.1e-205 719.9 415 81.9
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.9e-205 719.2 415 81.9
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.5e-205 718.8 415 81.4
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-204 716.5 415 81.9
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.6e-204 716.1 415 81.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.1e-204 715.7 415 81.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.1e-204 715.7 415 80.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.7e-204 715.3 432 79.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.0e-203 713.4 415 80.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.3e-203 713.0 415 81.9
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.8e-203 712.6 415 81.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.1e-203 711.1 415 80.7
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-202 709.1 415 80.0
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-202 709.1 415 80.0
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.9e-202 709.1 415 81.0
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.5e-202 708.8 415 81.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.3e-202 708.0 414 80.9
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 4.3e-202 708.0 415 81.0
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.6e-201 706.1 435 78.6
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.8e-201 705.3 415 80.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.1e-200 701.4 415 79.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.1e-200 701.4 415 78.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 4.1e-200 701.4 415 79.5
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 4.1e-200 701.4 415 78.3
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 6.9e-200 700.7 415 79.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.5e-199 699.5 415 79.0
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-199 699.5 415 79.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.5e-199 699.5 415 78.6
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.0e-199 699.1 415 78.6
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.0e-199 699.1 413 78.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-199 698.7 415 79.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.4e-199 698.4 415 79.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.5e-199 698.0 432 78.0
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 7.7e-199 697.2 414 80.2
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.0e-198 696.8 415 80.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 415 79.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.5e-198 694.1 414 78.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.2e-197 691.8 414 79.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.2e-197 691.4 415 77.3
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 7.2e-197 690.6 415 79.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 9.4e-197 690.3 413 78.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.2e-196 689.9 415 77.8
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-196 689.9 415 78.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.2e-196 689.9 415 77.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.6e-196 689.5 417 77.9
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.6e-196 689.5 415 79.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.7e-196 688.7 415 77.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.7e-196 688.7 415 78.6
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 6.1e-196 687.6 415 77.3
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 6.1e-196 687.6 414 78.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.1e-196 687.6 413 76.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 6.1e-196 687.6 414 78.0
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.0e-195 686.8 414 78.0
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.0e-195 686.8 415 78.8
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.0e-195 685.3 410 77.3
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.5e-194 682.9 415 77.6
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-194 682.6 415 78.8
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.0e-194 682.6 428 77.1
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 2.5e-194 682.2 415 76.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.5e-194 682.2 415 77.6
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-194 681.8 448 73.4
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.3e-194 681.8 414 78.7
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 3.3e-194 681.8 415 76.6
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.3e-194 681.4 415 76.1
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.3e-194 681.4 414 78.3
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 5.7e-194 681.0 415 76.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 5.7e-194 681.0 413 76.8
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 9.7e-194 680.2 415 76.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 9.7e-194 680.2 415 76.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.3e-193 679.9 412 77.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.7e-193 679.5 410 78.3
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.7e-193 679.5 414 78.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.7e-193 679.5 414 78.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.7e-193 679.5 414 77.8
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-193 679.1 431 76.1
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-193 679.1 431 76.3
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 8.2e-193 677.2 414 77.3
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.8e-192 676.0 414 77.8
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.1e-192 675.2 431 76.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.6e-191 672.2 415 75.4
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.4e-191 671.8 414 75.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.9e-191 671.0 415 75.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.0e-190 670.2 417 75.5
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.3e-190 669.8 454 70.9
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.9e-190 668.7 415 74.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.8e-190 668.3 403 80.6
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.0e-190 667.9 413 75.8
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.5e-190 667.5 415 75.7
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 8.5e-190 667.2 415 74.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 75.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.1e-189 666.8 415 75.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.9e-189 666.0 416 75.0
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.2e-189 664.8 414 74.9
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.1e-188 662.5 414 74.9
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 8.8e-187 657.1 416 74.5
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 7.4e-186 654.1 419 74.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 7.0e-184 647.5 412 74.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 7.0e-184 647.5 418 72.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 9.1e-184 647.1 412 74.3
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.2e-183 646.7 411 74.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.6e-183 646.4 497 64.2
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.0e-182 643.7 415 74.7
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.7e-182 642.9 419 72.6
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.5e-182 640.6 411 72.5
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.5e-181 639.8 411 74.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 9.4e-181 637.1 415 73.7
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.6e-180 635.2 414 74.2
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.1e-180 634.4 412 72.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.4e-179 633.3 413 71.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 2.6e-178 629.0 415 73.5
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.7e-178 627.9 357 82.4
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.8e-177 625.5 416 69.5
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.6e-175 619.8 367 79.3
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.5e-175 618.2 410 71.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-174 616.3 411 70.8
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 6.5e-174 614.4 420 67.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.2e-170 603.6 411 69.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-170 603.6 363 77.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 7.0e-168 594.3 357 77.3
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-164 583.6 340 78.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.7e-164 581.6 415 68.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.0e-163 578.9 340 79.7
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 4.3e-157 558.5 411 62.8
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.4e-154 548.9 432 64.6
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.0e-147 527.3 412 62.9
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.0e-147 527.3 412 59.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 3.4e-146 522.3 412 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.9e-145 518.5 410 59.5
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.3e-139 499.6 301 78.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.3e-134 483.0 426 54.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.6e-134 481.1 340 66.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-128 463.0 315 71.7
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 4.7e-124 448.7 302 73.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.7e-111 406.4 223 83.4
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.1e-108 396.7 291 67.4
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 3.8e-105 386.0 235 77.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.8e-105 386.0 416 47.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 6.0e-103 378.6 498 40.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 5.3e-99 365.5 406 46.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.2e-98 364.4 420 46.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 2.5e-96 356.7 243 67.9
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.5e-96 355.5 198 83.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.3e-94 350.1 198 82.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.2e-80 302.8 220 68.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 4.5e-74 282.7 216 67.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.1e-67 261.5 173 72.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.9e-65 253.4 258 52.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.6e-63 247.7 160 73.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.2e-62 242.7 178 68.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-60 236.9 167 69.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.1e-59 231.9 154 70.1
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.9e-56 224.2 229 52.8
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.4e-53 213.4 181 59.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 8.3e-52 208.8 125 78.4
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-51 208.0 124 77.4
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.8e-51 207.6 333 39.0
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-51 207.2 121 78.5
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.5e-50 203.4 125 76.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-47 194.9 339 38.1
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-38 164.9 122 60.7
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 7.0e-35 152.5 95 73.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-28 131.3 86 73.3
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.3e-28 129.0 122 54.9
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 7.0e-27 125.9 66 84.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.3e-24 116.7 71 77.5
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 2.3e-17 94.4 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.1e-16 92.0 87 49.4
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 5.2e-14 83.2 57 63.2
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.2e-11 73.9 59 62.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 3.0e-09 67.4 62 51.6
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 3.0e-09 67.4 35 80.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 7.3e-08 62.8 306 21.6


User provided reference genes

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