Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 0.0e+00 1347.8 722 100.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 2.8e-217 759.2 726 57.7
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 8.3e-217 757.7 719 58.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 9.5e-213 744.2 745 56.6
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.6e-204 716.8 732 56.0
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 8.9e-203 711.1 733 56.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 5.8e-202 708.4 722 55.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.1e-195 686.0 720 54.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 4.1e-192 675.6 721 53.0
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.6e-191 673.7 727 53.2
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.1e-190 668.7 722 52.9
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.5e-189 666.4 739 53.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.6e-189 665.2 734 53.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 9.5e-189 664.5 734 53.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.4e-186 656.0 722 52.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.4e-186 655.6 722 52.6
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 9.9e-186 654.4 724 50.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.2e-185 653.3 719 51.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.1e-183 646.7 734 52.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.6e-178 629.8 723 51.2
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.2e-175 620.9 723 50.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 3.3e-173 612.8 730 50.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.2e-172 610.9 699 52.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.2e-172 608.6 732 49.5
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.8e-170 602.1 722 49.6
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.7e-166 590.5 715 48.1
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.3e-166 590.1 730 48.8
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 6.6e-166 588.6 727 49.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.3e-164 584.3 720 47.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.8e-162 575.5 654 50.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.2e-161 573.5 723 50.5
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 3.8e-161 572.8 733 47.9
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.6e-159 567.4 714 48.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.7e-159 566.6 733 49.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 5.6e-157 558.9 726 47.7
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 5.6e-157 558.9 724 47.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.4e-157 558.5 729 47.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-156 557.8 724 47.2
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.6e-154 550.1 723 46.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.0e-153 548.1 731 46.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.8e-153 546.2 602 50.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 9.3e-152 541.6 720 46.5
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 1.2e-151 541.2 671 47.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.3e-150 537.0 744 45.4
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.0e-150 536.6 726 46.3
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 6.7e-150 535.4 736 48.2
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.7e-150 535.0 732 44.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 9.6e-149 531.6 724 45.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 3.7e-148 529.6 728 46.4
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-147 527.7 729 45.1
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-147 526.9 796 42.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.0e-146 523.9 742 44.3
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.6e-146 523.5 737 45.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.5e-146 522.7 722 46.0
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.3e-145 521.2 728 44.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.7e-145 520.8 731 44.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.9e-145 520.0 735 44.1
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.5e-144 515.8 747 43.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 9.3e-144 515.0 728 45.7
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.3e-142 511.1 722 44.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.3e-142 510.4 571 50.4
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.2e-140 503.8 752 43.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 9.0e-139 498.4 721 46.5
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.8e-137 493.0 592 47.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 9.4e-136 488.4 643 47.6
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.1e-135 487.3 753 43.7
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.6e-135 486.1 726 44.5
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.1e-135 485.7 549 49.7
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 7.9e-135 485.3 736 42.1
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.1e-134 482.6 701 43.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 6.7e-134 482.3 741 40.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.7e-133 479.2 730 42.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 7.4e-133 478.8 719 40.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 9.7e-133 478.4 730 42.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.2e-132 477.2 736 41.8
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.3e-132 475.7 696 43.5
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.1e-131 473.4 591 47.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 6.9e-131 472.2 725 42.8
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-130 471.5 719 40.6
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.0e-130 470.7 729 42.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.5e-130 469.5 723 41.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.0e-129 466.1 727 41.0
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 8.5e-129 465.3 600 47.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.2e-128 462.2 643 46.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.4e-126 458.0 730 42.9
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.7e-124 449.9 590 45.9
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 7.0e-123 445.7 733 44.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.7e-122 442.2 697 41.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.4e-118 431.4 698 43.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.0e-118 430.3 656 40.2
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.0e-117 427.6 743 42.8
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 8.2e-116 422.2 727 40.4
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.6e-114 417.9 704 39.9
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.7e-113 414.5 483 49.5
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.0e-113 412.9 600 43.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-112 411.8 472 53.8
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.9e-112 411.0 531 48.4
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.8e-107 394.4 480 49.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.5e-101 374.8 598 38.5
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.0e-97 359.8 552 44.0
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 6.8e-94 349.4 549 42.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.5e-93 345.9 465 44.5
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 9.8e-93 345.5 747 34.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 6.3e-92 342.8 649 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 9.5e-88 328.9 749 34.8
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.2e-87 328.6 527 38.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.8e-87 327.4 714 34.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.3e-84 318.5 374 47.9
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 3.7e-84 317.0 634 36.8
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.9e-84 316.6 492 41.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.0e-83 312.8 421 45.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.0e-82 309.7 671 34.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 6.6e-81 306.2 791 33.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.9e-80 304.7 511 37.4
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.1e-79 301.2 677 34.3
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.1e-79 301.2 677 34.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-78 298.9 501 39.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 6.4e-76 289.7 588 34.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.9e-68 264.2 684 33.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.4e-68 263.1 360 43.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.1e-66 258.1 349 41.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.6e-53 213.0 446 34.5
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.2e-47 193.4 217 48.8
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.5e-45 187.2 374 33.2
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.2e-44 184.9 273 43.6
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.9e-44 183.7 451 32.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.9e-40 171.8 229 45.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 4.8e-39 167.2 224 41.5
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 8.1e-39 166.4 225 43.6
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.5e-35 153.7 237 41.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 7.1e-35 153.3 380 32.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.6e-34 152.1 209 46.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.6e-34 152.1 242 42.6
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.7e-34 151.4 213 40.8
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.7e-34 151.4 196 41.3
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-33 147.5 338 34.6
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.1e-33 147.1 254 43.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 4.1e-30 137.5 224 37.1
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.9e-28 131.3 431 28.8
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.0e-28 130.6 137 46.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.2e-27 127.9 206 41.3
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 9.3e-27 126.3 130 51.5
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.1e-24 119.4 363 31.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 5.7e-24 117.1 319 33.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-20 105.1 608 25.7
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.2e-19 100.9 103 51.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.2e-19 100.1 103 51.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.9e-17 94.4 84 52.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 6.7e-17 93.6 124 45.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 8.8e-17 93.2 224 33.5
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.5e-16 91.7 60 65.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.5e-16 91.7 93 51.6
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.7e-16 89.7 105 48.6
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.7e-15 89.0 128 44.5
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 6.3e-15 87.0 629 23.7
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.1e-14 84.3 141 41.1
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-13 82.8 108 44.4
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-13 82.4 204 33.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.4e-13 81.3 75 50.7
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.7e-12 79.0 90 48.9
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 2.5e-11 75.1 81 54.3
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.6e-10 72.4 249 28.5
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.6e-08 65.1 129 33.3
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 4.8e-07 60.8 376 24.7
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.1e-06 59.7 74 40.5
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.1e-06 57.8 84 39.3
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 4.1e-06 57.8 145 31.7


User provided reference genes

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