Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 8.4e-168 593.6 292 100.0
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 2.5e-135 485.7 292 80.5
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.1e-135 484.2 292 80.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.3e-132 474.9 292 78.4
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.3e-131 471.1 285 80.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-129 466.5 292 78.4
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 4.5e-129 464.9 292 79.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.5e-128 461.1 293 77.5
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 6.5e-128 461.1 293 77.5
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.9e-127 459.5 292 79.5
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 5.5e-127 458.0 292 77.4
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.5e-127 458.0 292 77.4
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.7e-126 455.7 292 77.7
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.8e-125 453.0 291 77.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 3.0e-125 452.2 292 75.7
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 5.1e-125 451.4 290 76.9
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.1e-124 450.3 290 77.6
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.9e-124 449.5 286 75.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.9e-124 449.5 290 78.3
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.5e-124 449.1 288 74.7
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.3e-124 448.7 292 75.7
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 4.3e-124 448.4 290 75.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.7e-124 448.0 292 75.0
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.3e-123 446.8 286 75.5
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.7e-123 445.3 285 76.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-122 443.4 292 75.0
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.8e-122 443.0 287 74.9
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.4e-122 442.6 292 74.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 3.1e-122 442.2 292 75.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 4.1e-122 441.8 292 75.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 9.0e-122 440.7 289 74.0
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.6e-121 439.1 292 75.3
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.6e-121 439.1 287 73.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 3.4e-121 438.7 302 72.8
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.4e-121 438.7 290 76.6
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.5e-121 438.3 292 74.7
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 7.7e-121 437.6 292 74.7
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.7e-121 437.6 292 75.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.3e-120 436.8 286 73.4
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 5.0e-120 434.9 292 72.3
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.0e-120 434.9 285 73.0
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.5e-120 434.1 287 74.6
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-119 433.0 286 73.8
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.9e-119 433.0 287 73.5
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.5e-119 432.6 286 74.1
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.5e-119 432.6 286 72.4
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 5.5e-119 431.4 286 72.7
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.2e-119 431.0 292 74.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 9.4e-119 430.6 285 74.4
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 9.4e-119 430.6 286 72.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.6e-118 429.9 290 71.0
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.7e-118 429.1 285 74.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.6e-118 428.7 329 67.8
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 4.6e-118 428.3 285 74.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 7.9e-118 427.6 286 75.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.3e-117 426.0 292 72.6
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.3e-117 426.0 292 72.6
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.9e-117 425.2 255 82.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.1e-116 423.7 286 72.7
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.0e-116 422.9 285 73.7
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 4.3e-116 421.8 285 73.3
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 7.4e-116 421.0 286 73.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.3e-115 420.2 285 73.0
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.3e-115 420.2 292 70.5
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.3e-115 420.2 302 69.5
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-115 419.9 292 71.6
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-115 419.9 292 72.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.7e-115 419.9 280 75.0
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.7e-115 419.9 286 73.1
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.2e-115 419.5 295 71.5
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.2e-115 419.5 285 73.0
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.8e-115 419.1 285 73.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 4.8e-115 418.3 286 72.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.3e-115 417.9 285 72.6
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 6.3e-115 417.9 285 74.0
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.1e-114 417.2 285 71.9
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-114 416.8 286 72.4
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 4.1e-114 415.2 285 71.6
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.1e-114 415.2 286 73.4
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 9.1e-114 414.1 287 70.7
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 9.1e-114 414.1 294 71.4
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.2e-113 413.7 285 71.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.0e-113 412.9 255 80.0
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.4e-113 412.1 285 71.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.4e-113 412.1 291 71.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 5.9e-113 411.4 292 70.5
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 3.8e-112 408.7 283 72.4
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.5e-112 407.9 323 66.6
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.1e-111 407.1 238 81.9
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.4e-111 406.8 302 68.5
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.2e-111 405.2 255 76.5
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 7.9e-110 401.0 286 69.2
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.9e-109 398.7 292 68.8
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.2e-109 398.3 291 69.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 9.7e-108 394.0 295 70.5
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.8e-107 391.7 289 68.9
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.1e-106 389.0 326 63.2
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.1e-106 389.0 326 63.2
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 4.1e-106 388.7 286 67.5
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.2e-105 387.1 289 67.8
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-103 380.6 292 67.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 7.2e-103 377.9 262 71.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 9.4e-103 377.5 262 72.5
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.2e-102 377.1 280 64.6
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.8e-101 373.2 256 72.3
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.6e-100 369.4 232 77.2
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 8.2e-99 364.4 278 63.7
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.1e-98 362.5 285 64.2
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.0e-96 357.5 256 70.3
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 9.4e-95 350.9 281 63.0
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.6e-94 350.1 208 81.2
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 5.7e-92 341.7 241 68.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 7.5e-92 341.3 291 62.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.3e-91 338.2 285 61.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.7e-88 330.1 275 61.1
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 5.5e-87 325.1 285 55.8
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.7e-86 322.0 249 62.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.3e-83 313.9 292 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 5.6e-79 298.5 237 62.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.6e-71 271.9 229 65.5
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 4.0e-69 265.8 169 74.6
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.1e-62 243.4 193 66.3
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.2e-58 229.6 298 48.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.4e-50 204.1 260 43.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 8.1e-46 188.3 131 71.0
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.4e-44 182.6 273 37.4
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.4e-42 176.8 151 61.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.9e-40 169.5 152 59.9
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 8.7e-40 168.3 151 59.6
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 8.7e-40 168.3 151 59.6
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 7.6e-36 155.2 138 60.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 5.4e-34 149.1 118 59.3
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.8e-29 134.0 379 28.0
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.9e-28 128.3 238 34.0
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-27 127.5 91 70.3
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.2e-25 121.3 169 43.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.9e-24 116.3 74 74.3
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.1e-23 114.8 101 59.4
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 4.8e-22 109.4 89 65.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.1e-21 108.2 83 68.7
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.4e-20 103.2 66 68.2
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.8e-16 90.9 69 66.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.1e-16 89.4 65 69.2
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.9e-15 87.4 93 51.6
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.7e-15 85.9 46 78.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.7e-15 85.1 46 78.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.7e-15 85.1 46 78.3
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.1e-14 84.0 93 51.6
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.1e-14 84.0 189 30.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.8e-14 83.6 61 72.1
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 4.8e-14 82.8 144 37.5
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-13 81.3 89 52.8
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-13 81.3 89 52.8
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.1e-13 79.7 122 43.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 9.0e-13 78.6 110 47.3
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-12 77.8 46 71.7
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.6e-12 75.5 57 71.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.6e-09 66.6 37 83.8
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.2e-06 55.5 44 70.5


User provided reference genes

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