Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-24 115.5 65 100.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.8e-23 110.5 65 92.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.4e-22 109.0 65 90.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.4e-22 108.2 65 90.8
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 9.0e-22 106.3 63 92.1
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.5e-21 105.5 65 89.2
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.0e-21 105.1 65 86.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 2.6e-21 104.8 65 89.2
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.5e-21 104.0 65 84.6
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 5.8e-21 103.6 65 87.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.6e-21 103.2 65 86.2
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.0e-20 102.8 65 86.2
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 86.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 87.7
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 87.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.3e-20 102.4 63 87.3
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 87.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 86.2
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 87.9
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.2e-20 101.7 64 87.5
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.8e-20 100.9 65 84.6
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.5e-20 100.1 67 83.6
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.5e-20 100.1 67 86.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.5e-20 100.1 67 86.6
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.5e-20 100.1 66 87.9
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 6.5e-20 100.1 60 90.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.4e-20 99.8 66 86.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 84.8
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.1e-19 99.4 67 85.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.4e-19 99.0 67 85.1
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 81.8
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 86.4
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 84.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 2.5e-19 98.2 65 84.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.5e-19 98.2 64 85.9
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.2e-19 97.8 66 84.8
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 4.2e-19 97.4 67 85.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 5.5e-19 97.1 64 85.9
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.1e-19 96.7 68 80.9
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 9.3e-19 96.3 66 84.8
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.3e-19 96.3 65 83.1
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.2e-18 95.9 68 83.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.2e-18 95.9 63 79.4
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.6e-18 95.5 62 87.1
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 80.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.6e-18 95.5 67 80.6
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.1e-18 95.1 68 80.9
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.7e-18 94.7 64 82.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.5e-18 94.4 63 81.0
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.5e-18 94.4 64 82.8
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.5e-18 94.4 60 86.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.0e-18 93.6 71 74.6
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.0e-18 93.6 71 74.6
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 6.0e-18 93.6 65 78.5
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 6.0e-18 93.6 65 78.5
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.0e-18 93.6 65 78.5
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.3e-17 91.7 67 80.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.0e-17 91.3 64 81.2
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.0e-17 91.3 63 77.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 5.1e-17 90.5 65 78.5
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 5.1e-17 90.5 65 78.5
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 5.1e-17 90.5 63 74.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.7e-17 90.1 66 78.8
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 6.7e-17 90.1 61 80.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.7e-17 89.7 60 81.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-15 85.9 61 80.3
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.3e-15 85.9 59 79.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 72.3
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 73.8
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.1e-15 85.1 63 73.0
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.1e-15 85.1 67 68.7
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 2.8e-15 84.7 66 74.2
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 2.8e-15 84.7 63 73.0
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.7e-15 84.3 66 72.7
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.3e-15 83.6 67 76.1
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 70 72.9
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.8e-14 82.0 63 71.4
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.1e-14 81.3 70 68.6
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 5.3e-14 80.5 68 67.6
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.5e-13 79.0 59 76.3
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 2.0e-13 78.6 59 76.3
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 2.6e-13 78.2 77 67.5
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 7.6e-13 76.6 63 66.7
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 7.6e-13 76.6 63 66.7
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 7.6e-13 76.6 63 65.1
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-12 75.9 58 75.9
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 1.7e-12 75.5 65 66.2
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.8e-12 74.3 61 60.7
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.8e-12 74.3 61 60.7
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 3.8e-12 74.3 64 67.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 3.8e-12 74.3 64 67.2
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 3.8e-12 74.3 55 78.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 67.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 67.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 5.0e-12 73.9 64 67.2
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.1e-11 72.8 52 78.8
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.4e-11 72.4 62 71.0
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-10 68.9 44 88.6
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 6.1e-10 67.0 63 61.9
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 7.9e-10 66.6 58 60.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.0e-09 66.2 62 66.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-09 65.9 58 63.8
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.9e-09 64.3 60 60.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.7e-09 63.5 58 60.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.7e-09 63.5 59 57.6
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.5e-08 62.4 76 53.9
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.5e-08 61.6 52 63.5
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.3e-08 61.2 61 59.0
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 3.3e-08 61.2 58 60.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 55.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 55.2
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 58.6
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 58.6
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 4.3e-08 60.8 62 56.5
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 60.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.4e-08 60.1 58 56.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.1 60 58.3
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.1 60 58.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.3e-07 59.3 58 56.9
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-07 59.3 58 56.9
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.6e-07 58.9 59 57.6
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.6e-07 58.9 54 61.1
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-07 58.9 54 61.1
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.2e-07 58.5 62 54.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.8e-07 58.2 55 61.8
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.7e-07 57.8 61 59.0
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 6.3e-07 57.0 57 54.4
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 6.3e-07 57.0 58 53.4
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 6.3e-07 57.0 57 54.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.3e-07 57.0 57 54.4
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.2e-07 56.6 62 54.8
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.1e-06 56.2 59 52.5
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 55.6
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 61.8
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.8e-06 55.5 58 55.2
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 52 59.6
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 56.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.1e-06 54.7 57 56.1
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 3.1e-06 54.7 60 53.3
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.1e-06 54.3 74 50.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 5.3e-06 53.9 60 51.7
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.0e-06 53.1 58 56.9


User provided reference genes

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