Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.9e-53 210.3 146 100.0
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 7.9e-34 147.5 145 78.6
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.7e-26 121.7 148 56.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.7e-26 121.7 148 54.1
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 7.4e-24 114.4 149 64.4
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 9.7e-24 114.0 146 61.6
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.7e-23 113.2 72 75.0
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.8e-23 112.5 147 63.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.7e-23 112.1 148 66.2
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.2e-23 110.9 74 73.0
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 8.2e-23 110.9 147 63.9
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.4e-22 110.2 74 74.3
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.4e-22 110.2 149 51.7
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.8e-22 109.8 74 74.3
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.4e-22 109.4 148 62.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.4e-22 109.4 74 73.0
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 3.1e-22 109.0 147 46.9
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.1e-22 108.6 76 72.4
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.1e-22 108.6 150 48.0
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.3e-22 108.2 149 56.4
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 5.3e-22 108.2 150 59.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 5.3e-22 108.2 74 71.6
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 9.1e-22 107.5 147 61.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 9.1e-22 107.5 74 73.0
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 9.1e-22 107.5 153 57.5
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.2e-21 107.1 149 59.7
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.2e-21 107.1 148 55.4
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.2e-21 107.1 150 57.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.5e-21 106.7 152 61.8
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.5e-21 106.7 146 53.4
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.0e-21 106.3 147 55.8
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.0e-21 106.3 147 55.8
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.0e-21 106.3 168 58.9
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.6e-21 105.9 146 50.0
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.4e-21 105.5 148 62.8
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.4e-21 105.5 146 61.6
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 3.4e-21 105.5 146 59.6
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.5e-21 105.1 151 56.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 5.9e-21 104.8 152 63.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 5.9e-21 104.8 74 71.6
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.9e-21 104.8 149 52.3
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 7.7e-21 104.4 74 73.0
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.7e-20 103.2 143 53.8
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.7e-20 103.2 147 53.7
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 1.7e-20 103.2 148 45.3
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 2.2e-20 102.8 149 48.3
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.2e-20 102.8 150 54.0
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.9e-20 102.4 74 64.9
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 2.9e-20 102.4 77 68.8
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.8e-20 102.1 149 47.7
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.8e-20 102.1 140 58.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 5.0e-20 101.7 148 53.4
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 5.0e-20 101.7 74 64.9
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 5.0e-20 101.7 73 65.8
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 5.0e-20 101.7 167 57.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-20 101.3 73 69.9
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 6.5e-20 101.3 66 75.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.4e-19 100.1 147 52.4
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.2e-19 99.0 74 70.3
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 5.5e-19 98.2 73 65.8
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 7.2e-19 97.8 75 69.3
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 9.4e-19 97.4 66 72.7
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.6e-18 96.7 146 53.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.6e-18 96.7 147 51.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 2.1e-18 96.3 74 64.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.7e-18 95.9 73 67.1
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.7e-18 95.9 146 47.9
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 2.7e-18 95.9 161 46.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-18 95.5 75 65.3
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-18 95.5 75 66.7
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 4.7e-18 95.1 73 60.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.1e-18 94.7 67 70.1
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.0e-18 94.4 75 66.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 8.0e-18 94.4 144 47.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.0e-17 94.0 148 52.0
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.4e-17 93.6 74 64.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-17 93.2 74 64.9
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-17 92.8 73 67.1
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-17 92.8 73 67.1
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 2.3e-17 92.8 74 60.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.3e-17 92.8 74 60.8
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 3.0e-17 92.4 73 64.4
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.9e-17 92.0 75 65.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.9e-17 92.0 74 63.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.2e-17 91.7 73 63.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 6.7e-17 91.3 73 63.0
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 6.7e-17 91.3 73 64.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.1e-16 90.5 66 65.2
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.1e-16 90.5 80 63.8
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.1e-16 90.5 77 57.1
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.0e-16 89.7 71 60.6
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.0e-16 89.7 74 62.2
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 2.0e-16 89.7 146 57.5
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.3e-16 89.0 76 60.5
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-16 89.0 74 60.8
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.3e-16 89.0 75 60.0
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.3e-16 89.0 75 60.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.3e-16 89.0 75 60.0
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.4e-16 88.6 72 63.9
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 4.4e-16 88.6 71 63.4
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.7e-16 88.2 69 69.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 7.4e-16 87.8 71 62.0
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 7.4e-16 87.8 58 72.4
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.7e-16 87.4 61 72.1
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-15 87.0 67 65.7
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-15 87.0 67 65.7
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.7e-15 86.7 79 62.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 2.2e-15 86.3 67 65.7
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.2e-15 86.3 71 60.6
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.8e-15 85.9 72 61.1
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.8e-15 85.9 71 63.4
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 4.8e-15 85.1 67 62.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 4.8e-15 85.1 67 62.7
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 4.8e-15 85.1 67 62.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.8e-15 85.1 147 56.5
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 6.3e-15 84.7 78 59.0
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 6.3e-15 84.7 78 59.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 8.2e-15 84.3 71 59.2
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.1e-14 84.0 71 60.6
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-14 84.0 67 62.7
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.1e-14 84.0 67 62.7
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.4e-14 82.8 130 62.3
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 4.1e-14 82.0 67 61.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-14 82.0 67 61.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 4.1e-14 82.0 67 61.2
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.3e-14 81.6 137 54.7
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 7.0e-14 81.3 67 61.2
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.6e-13 80.1 75 57.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.6e-13 80.1 66 63.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.6e-13 80.1 74 55.4
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.0e-13 79.7 137 56.9
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.0e-13 79.7 144 44.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.5e-13 79.0 75 56.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 5.9e-13 78.2 55 69.1
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 5.9e-13 78.2 71 57.7
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 5.9e-13 78.2 71 57.7
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.3e-12 77.0 71 56.3
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.1e-11 73.9 60 63.3
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 2.5e-11 72.8 115 41.7
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.5e-11 71.6 72 50.0
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.1e-10 69.7 47 72.3
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.1e-10 69.7 42 78.6
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.4e-09 67.0 46 71.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.3e-09 66.2 48 66.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.8e-09 64.3 50 68.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.3e-08 62.4 47 63.8
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 4.4e-08 62.0 68 48.5
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 8.2e-07 57.8 64 54.7
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 1.1e-06 57.4 82 47.6


User provided reference genes

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