Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.9e-102 375.2 195 100.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.0e-65 254.2 212 67.0
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.3e-65 253.8 207 66.7
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.9e-65 252.7 207 69.6
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 6.5e-65 251.5 214 66.8
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.1e-64 250.8 201 69.2
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.2e-64 249.2 207 67.1
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 3.2e-64 249.2 207 72.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.6e-63 246.9 207 68.1
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.1e-63 246.5 205 66.3
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 4.6e-63 245.4 201 67.7
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.4e-62 243.8 210 66.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 2.5e-61 239.6 234 59.4
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.7e-61 238.4 205 67.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.3e-60 237.3 202 66.8
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.3e-60 237.3 207 62.3
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.7e-60 236.9 200 65.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 2.2e-60 236.5 204 65.7
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.8e-60 236.1 203 66.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 6.3e-60 235.0 200 65.5
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.8e-59 233.4 211 63.0
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 4.1e-59 232.3 198 65.2
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.9e-59 231.5 207 61.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.9e-58 228.4 210 62.4
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 5.9e-58 228.4 204 64.2
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 5.9e-58 228.4 200 63.5
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 7.7e-58 228.0 206 62.1
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.3e-57 227.3 206 61.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.8e-57 225.7 208 64.4
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 5.0e-57 225.3 211 63.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 5.0e-57 225.3 205 61.5
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.1e-56 224.2 205 62.9
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.9e-56 223.4 199 64.8
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.2e-56 222.2 177 68.9
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 4.2e-56 222.2 206 61.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 4.2e-56 222.2 205 62.9
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 2.1e-55 219.9 207 60.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.1e-55 219.9 208 60.1
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.7e-55 218.8 205 61.0
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.7e-55 218.8 205 62.9
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 4.7e-55 218.8 205 62.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.1e-55 218.4 206 61.2
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.9e-55 218.0 208 60.6
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 7.9e-55 218.0 211 62.6
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.4e-54 217.2 207 60.9
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.8e-54 216.9 224 56.7
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.0e-54 216.1 206 60.7
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 3.0e-54 216.1 206 61.7
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 3.9e-54 215.7 197 63.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 6.7e-54 214.9 208 60.6
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.1e-53 214.2 206 61.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.0e-53 213.4 212 62.7
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.0e-53 213.4 199 61.8
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 4.4e-53 212.2 207 58.9
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.8e-52 209.5 205 57.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.3e-52 208.4 205 60.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.4e-51 206.5 205 59.5
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.4e-51 206.5 210 56.2
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 9.1e-51 204.5 206 59.7
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.5e-50 203.8 182 63.7
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.0e-50 203.4 240 52.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 4.5e-50 202.2 202 58.9
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.9e-50 201.8 211 57.3
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.0e-49 201.1 210 58.6
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.2e-49 199.9 240 51.2
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.2e-49 199.9 202 56.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 2.2e-49 199.9 246 50.0
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.2e-49 199.9 200 60.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.9e-49 199.5 252 48.4
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.8e-49 199.1 206 58.3
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 8.5e-49 198.0 312 43.9
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.5e-48 197.2 203 59.6
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.9e-48 196.8 240 50.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.9e-48 196.8 254 49.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.9e-48 196.8 198 56.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 3.2e-48 196.1 238 50.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 3.2e-48 196.1 231 52.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 9.4e-48 194.5 199 60.3
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 9.4e-48 194.5 195 59.5
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.6e-47 193.7 190 57.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 2.7e-47 193.0 245 51.4
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 3.6e-47 192.6 150 72.0
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 4.7e-47 192.2 191 60.2
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.1e-47 191.8 245 48.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 8.0e-47 191.4 149 70.5
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.3e-46 189.9 200 57.0
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 3.9e-46 189.1 198 54.0
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 5.2e-46 188.7 275 44.7
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 6.7e-46 188.3 148 70.3
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 8.8e-46 188.0 249 49.8
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.1e-45 187.6 202 55.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-45 185.3 207 54.1
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.3e-44 184.1 207 55.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 2.8e-44 183.0 210 55.2
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 9.1e-43 177.9 199 55.3
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 9.1e-43 177.9 196 53.1
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-42 177.2 206 52.4
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-42 177.2 205 52.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.0e-41 174.5 216 52.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 5.0e-41 172.2 210 54.3
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 5.0e-41 172.2 210 54.3
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 8.5e-41 171.4 202 55.4
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 3.2e-40 169.5 208 54.3
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 5.5e-40 168.7 210 52.9
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 7.2e-40 168.3 202 53.0
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 9.4e-40 167.9 197 55.8
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.1e-39 166.8 190 50.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.0e-39 164.9 212 49.5
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-38 163.7 196 54.1
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.6e-37 159.8 259 44.0
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-37 158.7 210 51.0
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 7.5e-37 158.3 199 49.2
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.7e-36 157.1 233 47.2
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.3e-36 155.2 207 50.2
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.8e-35 153.7 204 49.0
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.7e-34 149.8 171 50.9
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.5e-33 145.2 243 40.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 8.5e-33 144.8 224 46.0
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 4.2e-32 142.5 155 54.2
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 7.2e-32 141.7 152 56.6
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.8e-30 137.1 191 46.1
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 8.8e-30 134.8 185 49.2
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 8.8e-30 134.8 145 53.8
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.7e-28 130.6 150 52.7
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 8.3e-28 128.3 237 40.9
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 8.3e-28 128.3 237 40.9
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.1e-27 127.9 231 39.8
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.8e-27 127.1 158 50.6
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-26 124.0 176 48.3
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-26 124.0 176 48.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.6e-26 124.0 184 42.9
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.7e-26 123.2 111 64.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.7e-25 120.6 208 44.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.1e-24 117.9 142 50.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.5e-24 117.5 152 48.0
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 9.5e-24 114.8 139 50.4
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-23 112.8 166 48.8
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 8.0e-23 111.7 85 70.6
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-22 109.4 162 47.5
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 2.0e-21 107.1 178 44.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 3.4e-21 106.3 138 47.1
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 9.8e-21 104.8 134 49.3
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.3e-20 102.1 141 46.8
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.4e-19 100.9 105 57.1
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.1e-19 99.4 162 44.4
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-18 95.9 63 76.2
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-18 95.9 63 76.2
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-18 95.9 63 76.2
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-18 95.9 63 76.2
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 4.5e-18 95.9 179 38.0
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-17 94.0 60 78.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-17 93.6 56 83.9
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-17 93.6 58 79.3
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.9e-17 93.2 125 46.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-17 92.0 56 82.1
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 6.6e-17 92.0 56 82.1
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 4.7e-15 85.9 181 40.3
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 6.1e-15 85.5 54 79.6
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.1e-15 85.5 51 82.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 5.2e-14 82.4 181 39.8
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.5e-13 80.9 51 80.4
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-12 75.9 46 80.4
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 4.9e-12 75.9 46 80.4
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.4e-11 72.4 90 51.1
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.6e-10 70.9 122 44.3
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.5e-10 69.7 73 50.7
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 1.1e-08 64.7 174 33.3
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.5e-08 64.3 76 55.3
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 5.6e-08 62.4 38 78.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-07 60.8 127 37.0
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 2.8e-07 60.1 135 33.3
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 2.3e-06 57.0 50 60.0
Os08g0192200 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.2e-06 55.8 82 42.7
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 8.9e-06 55.1 71 53.5


User provided reference genes

Program Settings