Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 0.0e+00 1289.2 694 100.0
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 5.0e-227 791.6 701 69.8
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.0e-171 606.3 746 52.4
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 7.8e-164 581.6 736 52.2
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.0e-143 513.8 724 49.3
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.2e-140 504.6 732 49.2
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.1e-137 493.8 750 48.4
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 5.8e-135 485.7 741 49.0
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.6e-130 469.2 744 48.3
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.8e-129 466.1 704 47.2
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.5e-125 453.8 717 47.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.5e-125 453.8 717 47.0
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.2e-125 453.0 713 46.3
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 5.5e-125 452.6 739 45.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 3.9e-123 446.4 715 44.9
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.1e-123 446.0 743 44.0
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.5e-122 444.5 749 44.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.9e-122 444.1 687 46.7
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-119 434.1 731 44.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 4.5e-119 433.0 692 46.7
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.9e-117 427.6 531 55.0
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 4.6e-116 422.9 721 44.1
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.5e-114 417.9 758 43.7
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-114 417.9 692 46.7
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 7.4e-114 415.6 761 42.3
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 5.3e-112 409.5 715 43.5
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.2e-109 400.2 720 43.2
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.5e-109 399.4 535 50.8
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.3e-107 394.0 782 40.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.5e-106 391.3 719 41.3
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.8e-105 386.3 716 43.0
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.4e-104 384.8 686 43.3
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.1e-104 383.3 745 40.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 9.1e-104 382.1 733 39.8
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.2e-103 381.7 739 41.4
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.2e-103 381.7 731 40.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.2e-102 377.5 724 42.0
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.4e-101 374.8 713 39.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.9e-101 374.4 708 41.9
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 2.1e-100 370.9 605 43.1
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 2.7e-100 370.5 706 40.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 3.6e-100 370.2 671 46.1
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.0e-99 368.6 712 41.3
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.1e-96 357.1 727 41.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.3e-96 356.3 751 40.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.1e-96 355.5 521 48.8
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 8.5e-94 349.0 759 38.6
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.5e-93 347.4 706 42.2
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.2e-93 347.1 567 47.4
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.0e-91 342.0 702 40.3
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.6e-90 337.4 696 39.4
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.3e-89 332.8 803 36.7
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.5e-87 327.0 750 35.7
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 6.5e-86 322.8 727 38.4
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.5e-85 319.7 663 39.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 7.2e-85 319.3 703 36.4
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 4.7e-84 316.6 731 36.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 8.8e-83 312.4 705 36.3
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.0e-82 311.2 697 38.3
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.3e-81 308.5 624 39.3
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 6.3e-81 306.2 735 35.5
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 6.3e-81 306.2 734 35.6
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.4e-80 305.1 702 36.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.5e-79 300.4 734 35.8
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 7.7e-79 299.3 695 39.3
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 2.3e-78 297.7 697 39.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 5.0e-78 296.6 809 34.2
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.2e-77 293.5 697 38.7
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.5e-77 293.1 731 34.9
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 9.5e-77 292.4 685 37.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.5e-77 292.4 693 37.7
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.6e-76 291.6 534 43.1
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.0e-75 288.9 747 35.3
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.0e-75 287.0 606 39.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 5.2e-75 286.6 815 34.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.2e-74 285.4 719 38.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-74 285.4 700 38.0
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.2e-74 285.4 754 34.7
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.5e-74 285.0 749 35.6
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.6e-74 284.3 623 38.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.7e-74 283.1 639 39.3
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 5.7e-74 283.1 593 42.0
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 9.8e-74 282.3 718 36.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.7e-73 281.6 654 39.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 5.9e-71 273.1 814 33.4
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.9e-70 270.8 600 38.7
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.3e-69 266.9 723 34.2
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.6e-69 266.5 707 38.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.1e-68 263.1 541 39.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.0e-67 262.3 728 34.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.8e-67 261.5 516 39.5
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 8.9e-67 259.2 716 34.4
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.5e-66 258.5 712 34.7
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 3.4e-66 257.3 846 31.3
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 7.5e-66 256.1 616 38.3
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.2e-65 254.6 234 59.0
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.4e-64 251.1 734 34.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 8.6e-62 242.7 696 35.2
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.9e-61 241.5 685 34.0
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.2e-60 238.8 804 31.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.1e-59 234.2 592 33.6
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.5e-58 231.9 688 34.4
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.5e-58 231.9 301 48.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 1.3e-57 228.8 705 32.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.7e-57 228.4 775 32.0
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 8.3e-57 226.1 752 34.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.4e-56 225.3 385 43.1
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.4e-56 224.6 207 60.4
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 8.6e-54 216.1 389 44.2
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 2.5e-45 188.0 470 38.5
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.0e-38 166.0 475 34.1
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.3e-38 164.9 490 35.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.9e-38 164.1 487 33.1
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-34 152.5 453 35.1
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.0e-34 151.8 170 54.7
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 2.2e-33 148.3 559 29.9
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 4.9e-33 147.1 577 30.0
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.6e-28 132.1 89 71.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 6.4e-25 120.2 116 67.2
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.2e-24 117.9 720 26.9
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.2e-24 117.5 368 33.7
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.8e-20 104.8 408 31.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 9.9e-18 96.3 82 58.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.1e-16 92.8 145 44.8
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 7.4e-13 80.1 89 48.3
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 2.4e-11 75.1 55 61.8
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 5.3e-11 73.9 49 67.3
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.5e-10 70.9 130 42.3
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 5.8e-10 70.5 42 76.2
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.7e-09 68.9 194 34.0
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 4.2e-08 64.3 68 52.9
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.3e-06 58.5 46 54.3
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 3.0e-06 58.2 173 34.1
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 3.0e-06 58.2 330 27.9
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.7e-06 56.6 76 51.3


User provided reference genes

Program Settings