Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 1.8e-41 172.2 87 100.0
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 1.2e-24 116.3 87 69.0
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 1.5e-24 115.9 88 69.3
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 3.4e-24 114.8 86 69.8
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 9.9e-24 113.2 87 67.8
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 9.9e-24 113.2 87 67.8
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 3.7e-23 111.3 87 65.5
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 8.3e-23 110.2 87 65.5
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 8.3e-23 110.2 87 65.5
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 8.3e-23 110.2 90 68.9
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.1e-22 109.8 87 65.5
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.1e-22 109.8 87 67.8
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 1.4e-22 109.4 87 66.7
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 1.4e-22 109.4 87 64.4
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 1.4e-22 109.4 86 69.8
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 2.4e-22 108.6 88 67.0
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 3.2e-22 108.2 87 65.5
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 4.1e-22 107.8 87 64.4
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 7.1e-22 107.1 83 62.7
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 7.1e-22 107.1 87 66.7
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 9.2e-22 106.7 84 65.5
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 9.2e-22 106.7 87 62.1
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 2.1e-21 105.5 81 69.1
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 2.1e-21 105.5 87 63.2
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 2.7e-21 105.1 84 65.5
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 4.6e-21 104.4 81 69.1
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 4.6e-21 104.4 81 69.1
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 6.0e-21 104.0 81 67.9
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 7.8e-21 103.6 87 62.1
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 1.0e-20 103.2 80 65.0
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 1.7e-20 102.4 87 64.4
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 2.3e-20 102.1 81 66.7
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 2.3e-20 102.1 87 62.1
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 3.0e-20 101.7 87 62.1
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 3.9e-20 101.3 86 61.6
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 3.9e-20 101.3 87 60.9
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 5.1e-20 100.9 87 60.9
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 6.6e-20 100.5 87 63.2
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 8.6e-20 100.1 89 61.8
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 1.1e-19 99.8 69 72.5
Lj5g0013352 Lotus japonicus HOM05D007509 ORTHO05D009525 1.5e-19 99.4 74 68.9
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 1.5e-19 99.4 65 73.8
Ciclev10013275m.g Citrus clementina HOM05D007509 ORTHO05D009525 1.9e-19 99.0 59 78.0
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 1.9e-19 99.0 87 59.8
Aa31LG1G21690 Aethionema arabicum HOM05D007509 ORTHO05D009525 2.5e-19 98.6 83 59.0
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 2.5e-19 98.6 81 65.4
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 3.3e-19 98.2 57 78.9
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 3.3e-19 98.2 81 64.2
EL10Ac4g08317 Beta vulgaris HOM05D007509 ORTHO05D009525 9.5e-19 96.7 88 59.1
HanXRQChr14g0432941 Helianthus annuus HOM05D007509 ORTHO05D009525 1.2e-18 96.3 87 58.6
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 1.6e-18 95.9 88 61.4
AUR62036098 Chenopodium quinoa HOM05D007509 ORTHO05D009525 3.6e-18 94.7 88 55.7
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 3.6e-18 94.7 87 56.3
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 3.6e-18 94.7 87 56.3
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 3.6e-18 94.7 68 69.1
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 4.7e-18 94.4 57 77.2
Zm00001eb190910 Zea mays HOM05D007509 ORTHO05D009525 4.7e-18 94.4 87 54.0
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 6.2e-18 94.0 69 69.6
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 1.1e-17 93.2 69 68.1
ECA246G0714 Erigeron canadensis HOM05D007509 ORTHO05D009525 1.4e-17 92.8 89 61.8
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 1.4e-17 92.8 84 56.0
Peaxi162Scf00722g00034 Petunia axillaris HOM05D007509 ORTHO05D009525 2.4e-17 92.0 100 54.0
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 2.4e-17 92.0 62 64.5
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 2.4e-17 92.0 95 57.9
Aqoxy2G01711 Aquilegia oxysepala HOM05D007509 ORTHO05D009525 3.1e-17 91.7 89 53.9
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 3.1e-17 91.7 69 66.7
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 3.1e-17 91.7 69 66.7
THA.LOC104816357 Tarenaya hassleriana HOM05D007509 ORTHO05D009525 3.1e-17 91.7 80 60.0
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 4.0e-17 91.3 69 68.1
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 4.0e-17 91.3 69 68.1
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 5.2e-17 90.9 59 72.9
Sp6g39270 Schrenkiella parvula HOM05D007509 ORTHO05D009525 5.2e-17 90.9 73 61.6
AUR62019539 Chenopodium quinoa HOM05D007509 ORTHO05D009525 6.8e-17 90.5 52 78.8
AT5G03460 Arabidopsis thaliana HOM05D007509 ORTHO05D009525 2.0e-16 89.0 73 57.5
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.0e-16 89.0 69 66.7
PSO339G5046 Papaver somniferum HOM05D007509 ORTHO05D009525 2.0e-16 89.0 52 76.9
Psat6g074800 Pisum sativum HOM05D007509 ORTHO05D009525 2.0e-16 89.0 68 66.2
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 2.6e-16 88.6 70 67.1
TPR.G31192 Trifolium pratense HOM05D007509 ORTHO05D009525 3.4e-16 88.2 80 57.5
Medtr1g063000 Medicago truncatula HOM05D007509 ORTHO05D009525 9.9e-16 86.7 80 57.5
Carub.0006s0228 Capsella rubella HOM05D007509 ORTHO05D009525 1.3e-15 86.3 73 57.5
AL6G12840 Arabidopsis lyrata HOM05D007509 ORTHO05D009525 1.7e-15 85.9 73 56.2
CARHR209880 Cardamine hirsuta HOM05D007509 ORTHO05D009525 2.2e-15 85.5 90 51.1
Thhalv10015146m.g Eutrema salsugineum HOM05D007509 ORTHO05D009525 1.1e-14 83.2 84 53.6
BcaC06g32063 Brassica carinata HOM05D007509 ORTHO05D009525 8.7e-12 73.6 70 55.7
BolC9t60072H Brassica oleracea HOM05D007509 ORTHO05D009525 8.7e-12 73.6 71 54.9
C02p01090 Brassica napus HOM05D007509 ORTHO05D009525 1.9e-11 72.4 68 54.4
C09p73360 Brassica napus HOM05D007509 ORTHO05D009525 1.9e-11 72.4 70 54.3
BolC2t06099H Brassica oleracea HOM05D007509 ORTHO05D009525 1.9e-11 72.4 68 54.4
BraA02t04762Z Brassica rapa HOM05D007509 ORTHO05D009525 1.9e-11 72.4 68 54.4
A10p32560 Brassica napus HOM05D007509 ORTHO05D009525 2.5e-11 72.0 60 60.0
BraA10t45291Z Brassica rapa HOM05D007509 ORTHO05D009525 2.5e-11 72.0 60 60.0
Aa31LG3G2340 Aethionema arabicum HOM05D007509 ORTHO05D009525 4.8e-10 67.8 46 67.4
unitig_0.g681 Utricularia gibba HOM05D007509 ORTHO05D009525 8.1e-10 67.0 49 69.4
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 1.1e-09 66.6 55 58.2
DCAR_020813 Daucus carota HOM05D007509 ORTHO05D009525 1.1e-09 66.6 61 57.4
SMO147G0160 Selaginella moellendorffii HOM05D007509 ORTHO05D009525 9.0e-09 63.5 54 59.3
Sed0008520 Sechium edule HOM05D007509 ORTHO05D009525 9.9e-08 60.1 72 44.4
HPP92_026749 Vanilla planifolia HOM05D007509 ORTHO05D009525 3.8e-07 58.2 30 83.3
Oeu056534.1 Olea europaea HOM05D007509 ORTHO05D009525 6.4e-07 57.4 30 80.0
CiPaw.03G172600 Carya illinoinensis HOM05D007509 ORTHO05D009525 1.9e-06 55.8 84 48.8
TAR627G1182 Trochodendron aralioides HOM05D007509 ORTHO05D008594 3.2e-06 55.1 29 75.9
Lsat_1_v5_gn_2_30820 Lactuca sativa HOM05D007509 ORTHO05D009525 7.1e-06 53.9 29 72.4


User provided reference genes

Program Settings