Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-104 382.5 194 100.0
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 7.4e-88 327.4 190 84.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.3e-87 326.6 187 85.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.8e-87 325.5 188 85.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.8e-86 322.8 188 85.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.4e-86 322.4 186 85.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.4e-86 322.4 189 83.6
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.1e-86 322.0 186 84.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.0e-85 319.3 191 82.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.9e-85 317.8 188 82.4
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.9e-85 317.8 193 79.8
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-84 316.2 187 82.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-84 316.2 174 85.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.2e-84 315.8 175 89.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 5.0e-84 314.7 186 81.2
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 5.0e-84 314.7 186 81.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.5e-84 314.3 185 83.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.5e-84 314.3 188 81.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 3.2e-83 312.0 176 85.2
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 4.2e-83 311.6 188 81.9
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 7.2e-83 310.8 188 82.4
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 9.4e-83 310.5 186 80.1
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.1e-82 309.3 189 79.4
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 4.7e-82 308.1 189 80.4
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.7e-82 308.1 186 81.2
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.7e-82 308.1 189 79.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.9e-82 307.4 189 76.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-81 306.6 196 77.0
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.3e-81 305.8 189 79.9
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 3.9e-81 305.1 198 75.8
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.1e-81 304.7 172 87.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 7.4e-80 300.8 183 79.8
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.7e-80 300.4 173 83.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.8e-79 298.1 173 80.9
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.2e-79 297.4 186 79.6
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-78 297.0 174 80.5
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.4e-78 295.8 190 79.5
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.4e-78 295.8 172 82.6
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.4e-78 295.8 190 78.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.1e-78 295.4 186 78.5
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.1e-78 295.4 163 85.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.0e-78 294.3 173 81.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.0e-78 294.3 173 81.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.2e-77 293.5 182 79.1
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.0e-77 292.7 187 75.4
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-77 292.7 190 77.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-77 292.7 173 81.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-77 292.7 173 81.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.6e-77 292.4 173 80.9
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-77 292.4 188 76.6
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.6e-77 292.4 185 75.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.6e-77 292.4 182 78.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.5e-77 291.6 173 80.3
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.5e-77 291.6 185 75.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 4.5e-77 291.6 185 75.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.9e-77 291.2 189 73.5
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 7.7e-77 290.8 190 76.8
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-76 290.4 173 81.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.3e-76 290.0 190 76.3
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.3e-76 290.0 190 76.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.3e-76 290.0 189 75.7
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.2e-76 289.3 190 75.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.2e-76 289.3 190 76.8
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-76 288.9 185 75.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.8e-76 288.5 193 75.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.8e-76 288.5 190 75.8
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.8e-76 288.5 189 74.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.0e-76 288.1 190 75.8
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.0e-76 288.1 189 76.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.5e-76 287.7 174 79.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.5e-76 287.7 182 78.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.5e-75 285.8 173 78.0
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-74 283.1 158 86.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.6e-74 283.1 187 75.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.7e-74 281.6 187 74.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 6.1e-74 281.2 187 77.5
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-73 280.0 182 75.8
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.3e-73 279.3 169 78.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.3e-73 279.3 188 75.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.3e-73 279.3 174 78.7
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-72 276.9 182 72.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.5e-72 276.6 173 74.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-72 276.2 182 72.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.0e-72 276.2 184 71.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.7e-72 274.6 170 78.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.2e-71 272.7 184 67.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.8e-71 272.3 176 72.7
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.8e-71 272.3 171 73.7
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.8e-71 271.6 162 81.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 6.3e-71 271.2 156 84.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-70 269.6 175 72.0
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.4e-70 269.2 170 77.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.4e-70 269.2 160 80.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.5e-69 265.0 169 72.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 7.7e-69 264.2 182 69.8
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.7e-68 263.1 158 77.8
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.9e-68 262.3 173 74.6
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.9e-68 262.3 170 72.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.8e-68 261.9 179 72.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.5e-68 261.2 168 75.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-67 260.4 170 72.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.5e-67 260.0 160 78.1
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-67 259.6 172 73.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.9e-67 259.6 170 73.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.9e-67 259.6 167 76.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.2e-67 258.8 172 75.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.2e-66 256.9 176 72.7
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-66 256.5 160 75.6
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-66 256.5 158 77.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.1e-66 256.1 170 70.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.7e-66 255.8 184 67.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 4.7e-66 255.0 165 75.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 4.7e-66 255.0 165 75.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.8e-65 253.1 176 73.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.8e-65 250.8 160 75.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.8e-65 250.8 170 73.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.4e-64 248.8 170 70.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 4.4e-64 248.4 168 70.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.5e-64 247.7 170 68.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.5e-64 247.7 160 74.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.1e-62 243.8 170 68.8
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-62 243.4 160 72.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.1e-62 242.3 170 68.2
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.1e-62 242.3 160 73.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.1e-62 242.3 163 69.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.5e-61 238.8 159 71.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 4.5e-61 238.4 160 70.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.2e-60 236.1 185 65.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.2e-60 236.1 163 69.3
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-60 235.7 168 70.2
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.8e-60 235.3 134 82.1
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-59 233.8 168 70.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-59 233.8 168 70.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.1e-59 233.8 173 67.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-58 230.3 168 69.0
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.2e-58 230.3 134 78.4
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.0e-58 227.6 151 71.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 4.0e-57 225.3 160 66.9
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-56 222.6 182 64.3
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.7e-56 221.5 159 68.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.7e-56 221.5 176 65.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.8e-56 220.7 138 80.4
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.9e-55 218.4 180 59.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 9.2e-54 214.2 163 63.8
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 9.2e-54 214.2 164 59.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.2e-53 213.8 166 67.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.0e-53 213.0 157 70.1
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.9e-52 209.1 165 59.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.9e-52 209.1 135 78.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.0e-52 208.4 189 57.7
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 7.3e-51 204.5 160 63.1
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.1e-50 203.0 153 62.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.1e-50 203.0 189 57.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.0e-49 198.7 129 75.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-48 196.8 167 62.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.3e-47 193.7 132 72.0
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.9e-47 191.8 169 58.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.4e-46 190.3 169 59.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.2e-46 189.1 169 59.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-44 184.1 159 58.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.6e-44 181.4 125 70.4
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 9.5e-43 177.6 142 55.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-41 173.7 116 75.9
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.6e-37 160.2 90 84.4
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-35 153.7 97 76.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-32 144.1 94 68.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.6e-32 142.9 91 70.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-31 140.6 176 48.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.4e-31 138.3 93 73.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.3e-31 137.9 148 44.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.6e-26 123.6 73 78.1
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-19 100.9 68 79.4
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.3e-19 99.4 79 60.8
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 7.1e-14 81.6 69 59.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.7e-12 77.0 106 43.4
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 3.3e-11 72.8 81 48.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.1e-10 68.2 36 80.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 6.9e-09 65.1 36 75.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.5e-08 63.9 32 87.5
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 3.4e-08 62.8 177 26.6
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.7e-07 60.5 32 84.4
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-07 60.5 106 31.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 3.8e-07 59.3 184 28.8
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 4.9e-07 58.9 32 81.2


User provided reference genes

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