Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 1.4e-109 399.8 224 100.0
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 8.3e-75 284.3 179 92.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.8e-43 179.1 226 52.7
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.7e-35 153.7 226 46.9
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.2e-33 147.5 216 45.8
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.1e-33 146.7 223 50.2
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 3.7e-30 136.0 196 52.0
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 9.0e-29 131.3 175 49.1
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.5e-28 130.6 219 44.3
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 4.5e-28 129.0 226 41.6
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 8.4e-27 124.8 213 46.9
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.4e-26 124.0 145 51.0
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 1.9e-26 123.6 157 51.6
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.5e-26 123.2 127 66.1
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 3.2e-26 122.9 153 54.2
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.6e-25 120.6 235 40.4
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 2.1e-25 120.2 228 42.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 2.7e-25 119.8 176 45.5
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.7e-25 119.8 228 40.8
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 3.5e-25 119.4 189 48.1
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 3.5e-25 119.4 161 47.8
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 6.0e-25 118.6 127 57.5
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 7.9e-25 118.2 122 59.0
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 7.9e-25 118.2 231 38.5
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.3e-24 117.5 172 38.4
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 1.8e-24 117.1 232 41.4
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 3.9e-24 115.9 145 47.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 8.7e-24 114.8 228 41.7
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 1.5e-23 114.0 163 48.5
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 3.3e-23 112.8 223 35.4
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 5.7e-23 112.1 217 40.6
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 5.7e-23 112.1 223 35.9
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.3e-22 110.9 141 41.8
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 1.3e-22 110.9 141 54.6
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.3e-22 110.9 223 35.4
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.6e-22 110.5 218 38.5
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 2.8e-22 109.8 141 41.1
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 3.7e-22 109.4 234 30.8
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.8e-22 109.0 158 43.0
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 8.2e-22 108.2 141 53.9
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 1.4e-21 107.5 217 41.0
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 1.4e-21 107.5 223 33.2
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 1.8e-21 107.1 158 45.6
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.4e-21 106.7 137 54.7
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 2.4e-21 106.7 221 35.3
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 4.1e-21 105.9 152 48.0
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 4.1e-21 105.9 141 42.6
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 5.3e-21 105.5 159 47.8
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 5.3e-21 105.5 159 47.8
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 1.5e-20 104.0 238 41.6
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.0e-20 103.6 141 42.6
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 3.4e-20 102.8 130 38.5
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.0e-19 101.3 208 38.0
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 1.7e-19 100.5 139 53.2
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 2.2e-19 100.1 72 72.2
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 3.8e-19 99.4 130 51.5
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 5.0e-19 99.0 137 51.8
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 5.0e-19 99.0 223 37.7
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.0e-19 99.0 193 45.6
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 6.5e-19 98.6 150 49.3
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 8.5e-19 98.2 158 43.7
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 1.4e-18 97.4 70 71.4
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.9e-18 97.1 130 36.9
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.5e-18 96.7 137 35.0
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 4.2e-18 95.9 116 40.5
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 5.5e-18 95.5 191 41.9
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.2e-17 94.4 141 49.6
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 6.1e-17 92.0 124 48.4
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 6.1e-17 92.0 124 50.0
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 1.3e-16 90.9 128 35.2
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 3.0e-16 89.7 170 41.8
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 3.0e-16 89.7 166 30.7
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 5.1e-16 89.0 64 68.8
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 6.7e-16 88.6 130 37.7
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 8.7e-16 88.2 152 43.4
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 3.3e-15 86.3 180 37.8
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 3.7e-14 82.8 70 58.6
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 8.2e-14 81.6 139 40.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 1.4e-13 80.9 129 41.1
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 4.1e-13 79.3 75 57.3
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 9.0e-13 78.2 108 54.6
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 4.5e-12 75.9 142 34.5
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 7.7e-12 75.1 108 54.6
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 7.7e-12 75.1 116 45.7
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 1.0e-11 74.7 103 55.3
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 1.0e-11 74.7 114 45.6
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 1.3e-11 74.3 115 47.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.7e-11 73.9 141 40.4
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 5.0e-11 72.4 122 52.5
Atru.chr6.1219 Acer truncatum HOM05D058201 ORTHO05D037924 1.1e-10 71.2 114 36.8
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 1.1e-10 71.2 138 33.3
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 2.5e-10 70.1 148 41.2
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 2.5e-10 70.1 111 34.2
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.5e-10 70.1 175 35.4
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.2e-10 69.7 118 43.2
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.5e-10 68.9 182 37.9
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.2e-10 68.6 182 37.4
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 2.1e-09 67.0 139 33.8
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 2.1e-09 67.0 139 33.8
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.7e-09 66.6 116 48.3
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.7e-09 66.6 156 30.8
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.6e-09 65.9 126 44.4
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 6.1e-09 65.5 99 40.4
ATR0684G111 Amborella trichopoda HOM05D007310 ORTHO05D002375 7.9e-09 65.1 73 46.6
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.4e-08 64.3 169 23.7
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-08 63.9 160 26.9
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.8e-08 63.9 164 32.3
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.8e-08 63.9 139 43.2
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 2.3e-08 63.5 113 48.7
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 3.0e-08 63.2 138 32.6
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 3.0e-08 63.2 106 31.1
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 6.7e-08 62.0 126 28.6
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 1.1e-07 61.2 68 44.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.5e-07 60.8 97 47.4
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.0e-07 60.5 106 49.1
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 2.0e-07 60.5 134 40.3
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 2.6e-07 60.1 118 30.5
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 2.6e-07 60.1 118 30.5
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 2.6e-07 60.1 112 40.2
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.3e-07 59.7 129 38.8
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 3.3e-07 59.7 153 35.3
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 3.3e-07 59.7 192 27.1
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.3e-07 59.7 172 32.6
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 4.4e-07 59.3 138 33.3
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 4.4e-07 59.3 123 40.7
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 4.4e-07 59.3 133 38.3
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 4.4e-07 59.3 190 28.4
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 4.4e-07 59.3 120 38.3
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 7.4e-07 58.5 123 37.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 9.7e-07 58.2 132 36.4
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.3e-06 57.8 105 44.8
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.3e-06 57.8 105 44.8
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.3e-06 57.8 115 41.7
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.7e-06 57.4 139 36.7
Os04g0450600 Oryza sativa ssp. japonica HOM05D021312 ORTHO05D012887 1.7e-06 57.4 136 28.7
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 2.2e-06 57.0 192 34.9
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 2.8e-06 56.6 127 37.8
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 4.8e-06 55.8 143 28.0
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 6.3e-06 55.5 115 27.0
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 6.3e-06 55.5 123 37.4
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 8.2e-06 55.1 122 41.8
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 8.2e-06 55.1 144 34.0


User provided reference genes

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