Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.8e-190 669.1 333 100.0
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 5.6e-168 594.3 333 87.4
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.2e-165 586.6 333 85.9
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.2e-165 586.6 333 85.9
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 6.4e-164 580.9 330 85.8
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 3.2e-163 578.6 333 84.7
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 8.6e-161 570.5 331 83.7
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 4.7e-159 564.7 330 82.4
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 1.1e-158 563.5 330 81.2
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 4.0e-158 561.6 330 82.7
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 2.6e-157 558.9 332 81.9
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 3.4e-157 558.5 332 81.6
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 4.4e-157 558.1 330 82.1
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 1.3e-156 556.6 332 81.9
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.2e-156 555.8 328 82.3
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.9e-156 554.7 329 81.8
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 1.1e-155 553.5 330 83.0
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 2.4e-155 552.4 330 80.3
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.4e-155 552.4 329 80.9
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.2e-155 552.0 330 81.5
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.2e-155 552.0 333 80.2
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 1.6e-154 549.7 332 81.0
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 3.5e-154 548.5 325 81.5
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.6e-154 548.1 330 80.0
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.0e-153 547.0 329 81.5
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.7e-153 546.2 325 81.5
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.3e-153 545.8 333 78.7
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 3.9e-153 545.0 330 79.7
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 3.9e-153 545.0 330 80.9
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 5.1e-153 544.7 329 80.2
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 3.3e-152 542.0 331 79.2
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.2e-151 540.0 333 79.3
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.2e-151 540.0 329 78.4
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.6e-151 539.7 330 78.5
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.8e-151 538.9 330 79.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 2.8e-151 538.9 330 78.8
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 3.6e-151 538.5 325 79.1
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 3.6e-151 538.5 324 82.1
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 4.7e-151 538.1 328 78.7
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 8.1e-151 537.3 331 78.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.1e-150 537.0 329 78.7
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.4e-150 536.6 328 79.3
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.8e-150 536.2 331 79.5
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.8e-150 536.2 333 76.6
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.8e-150 536.2 330 78.5
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 4.0e-150 535.0 328 79.0
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 4.0e-150 535.0 332 77.4
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 6.9e-150 534.3 331 79.5
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 9.0e-150 533.9 331 78.2
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.2e-149 533.5 325 79.1
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 2.6e-149 532.3 330 77.0
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 5.8e-149 531.2 329 78.7
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 5.8e-149 531.2 332 77.4
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 7.6e-149 530.8 332 77.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 7.6e-149 530.8 332 77.4
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 9.9e-149 530.4 330 78.2
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 9.9e-149 530.4 330 77.9
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 9.9e-149 530.4 331 76.4
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 9.9e-149 530.4 331 77.3
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.2e-148 529.3 331 77.6
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 3.8e-148 528.5 330 77.0
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 3.8e-148 528.5 348 75.0
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 3.8e-148 528.5 332 78.9
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 6.4e-148 527.7 331 77.9
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 2.4e-147 525.8 325 77.2
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 2.4e-147 525.8 331 77.0
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 2.4e-147 525.8 331 77.0
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 2.4e-147 525.8 331 77.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 3.2e-147 525.4 331 75.5
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 3.2e-147 525.4 325 77.8
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 3.2e-147 525.4 331 78.9
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 4.2e-147 525.0 331 77.9
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 9.3e-147 523.9 330 74.8
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.6e-146 523.1 330 75.8
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.1e-146 522.7 331 76.1
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 4.6e-146 521.5 329 76.6
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 6.0e-146 521.2 331 76.1
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.7e-145 519.6 331 74.0
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.7e-145 519.6 402 66.9
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 2.3e-145 519.2 313 80.2
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.3e-145 519.2 325 77.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 3.0e-145 518.8 331 75.2
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 3.0e-145 518.8 325 77.5
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 7.3e-144 514.2 330 75.5
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 6.9e-142 507.7 329 75.4
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.5e-141 506.5 361 69.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.5e-141 506.5 361 69.0
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 3.4e-141 505.4 317 76.3
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.9e-141 503.8 330 73.9
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 1.3e-137 493.4 352 70.2
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 3.1e-134 482.3 330 70.3
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 6.9e-134 481.1 330 71.2
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 3.4e-125 452.2 329 67.8
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.4e-125 452.2 330 67.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 3.0e-121 439.1 285 75.1
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.2e-117 427.2 355 62.3
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 5.9e-117 424.9 330 64.2
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 1.7e-116 423.3 328 64.3
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 6.5e-116 421.4 348 64.7
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 3.6e-114 415.6 284 73.6
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 3.9e-113 412.1 333 61.3
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 4.1e-110 402.1 269 70.3
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 4.2e-107 392.1 225 83.1
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.6e-106 390.2 329 59.9
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 3.0e-105 386.0 334 59.9
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 5.3e-102 375.2 223 80.3
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.8e-100 369.0 328 56.1
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.6e-98 362.5 328 55.8
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 7.0e-94 348.2 334 52.1
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 9.1e-94 347.8 330 53.3
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 3.5e-93 345.9 330 54.2
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 8.5e-92 341.3 221 77.4
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 3.2e-91 339.3 334 51.2
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.6e-90 337.0 327 52.9
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-90 336.3 331 52.6
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 8.0e-90 334.7 232 72.8
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-89 332.8 330 53.0
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-89 332.8 328 51.8
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-88 330.5 328 51.5
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-88 329.7 328 51.2
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-88 327.8 331 52.6
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 9.7e-88 327.8 330 51.5
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-87 326.2 328 50.6
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-87 325.5 328 51.5
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.3e-86 322.0 328 51.2
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 8.3e-79 298.1 329 48.3
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 8.3e-79 298.1 328 47.6
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.6e-77 293.9 329 47.7
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 3.4e-72 276.2 328 45.4
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-71 273.9 264 52.3
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.6e-68 261.9 148 83.8
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 6.4e-63 245.4 216 56.9
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.7e-60 237.3 149 78.5
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 6.4e-55 218.8 172 66.9
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.5e-53 213.0 178 64.0
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.7e-52 210.7 138 73.2
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 4.4e-48 196.1 216 52.8
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.3e-47 194.5 327 39.8
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 2.9e-47 193.4 129 72.1
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 4.9e-47 192.6 136 71.3
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 3.2e-46 189.9 105 83.8
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-44 183.7 194 46.9
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 6.6e-44 182.2 181 48.6
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 4.2e-38 162.9 157 54.1
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 9.6e-35 151.8 369 32.5
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 7.1e-30 135.6 74 85.1
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.5e-29 133.3 337 31.5
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 4.3e-27 126.3 314 30.9
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 5.3e-25 119.4 105 56.2
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.7e-23 114.4 346 28.0
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-23 113.6 98 55.1
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.4e-22 110.5 365 28.8
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 2.1e-21 107.5 68 64.7
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 4.8e-18 96.3 74 66.2
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 1.8e-17 94.4 296 29.4
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 4.0e-17 93.2 337 28.8
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.2e-14 83.6 60 73.3
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.5e-13 80.1 54 77.8
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.6e-13 79.7 45 80.0
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.3e-12 77.4 83 50.6
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 2.5e-11 73.9 46 73.9
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 3.3e-11 73.6 47 74.5
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 5.7e-11 72.8 43 74.4
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 9.6e-11 72.0 50 68.0
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 3.7e-10 70.1 65 55.4
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.0e-08 64.3 124 36.3
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.3e-07 61.6 139 32.4


User provided reference genes

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