Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 2174.4 1083 100.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1990.7 1088 91.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1798.1 1084 82.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1770.0 1084 81.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1769.6 1090 80.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1762.3 1088 80.1
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1749.9 1091 79.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1746.9 1088 78.8
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1746.5 1069 80.5
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1735.7 1085 79.0
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1734.2 1084 79.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1731.8 1086 78.8
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1729.1 1087 77.9
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1728.8 1086 79.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1728.4 1087 78.0
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1725.3 1096 78.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1724.1 1083 78.7
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1718.0 1089 78.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1714.9 1090 77.8
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1712.2 1090 77.4
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1710.3 1087 78.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1709.9 1087 77.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1708.7 1083 78.2
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1708.3 1085 78.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1693.3 1085 76.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1690.6 1085 77.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1688.7 1088 76.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1687.9 1085 76.5
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1686.4 1084 77.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1086 76.3
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1085 76.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1680.6 1083 76.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1676.8 1084 75.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1672.9 1084 75.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1084 76.3
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1670.6 1084 75.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1083 75.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1084 75.8
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1082 75.6
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1665.6 1169 71.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1081 75.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1091 75.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1660.2 1102 74.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1660.2 1092 75.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1084 75.1
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1657.1 1169 71.5
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1083 74.9
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1654.8 1086 75.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1654.8 1114 73.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1653.6 1081 75.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1081 75.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1645.6 1088 74.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1641.7 1086 74.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1636.7 1081 74.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.8 1083 74.1
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.8 1083 74.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1086 73.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1095 73.2
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1090 73.9
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1085 73.5
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1085 72.9
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1608.2 1084 72.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1083 72.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1086 73.0
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1065 74.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1085 72.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1602.0 1085 72.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1086 72.6
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1086 72.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1085 72.5
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1082 72.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1113 72.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1086 72.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1095 72.5
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1595.9 1084 73.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1084 74.1
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1085 73.2
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1592.8 1086 72.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1086 72.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1589.7 1086 72.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1083 72.3
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1586.6 1088 71.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1086 72.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1085 73.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1086 71.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1086 71.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1582.8 1101 72.6
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1093 71.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1019 77.5
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1083 72.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1085 72.3
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1081 72.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1086 71.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1085 72.1
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1569.3 1115 70.0
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1085 72.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1102 70.4
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1085 70.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 1106 69.5
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1057 72.5
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1534.2 1155 66.8
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1107 70.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1525.4 995 76.4
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1524.2 1002 75.1
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1084 71.0
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1089 68.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1110 67.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 1082 68.6
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 980 75.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1462.2 1105 65.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1374.4 1084 66.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1291.2 788 81.7
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1180.2 1088 54.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1177.5 689 84.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1176.0 1084 54.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1155.6 1126 52.5
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 717 79.6
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1138.6 671 83.0
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1136.3 1086 52.9
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1135.6 1090 52.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1098.2 758 72.2
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 4.9e-298 1028.1 842 60.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.3e-278 962.2 610 79.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.1e-272 943.0 817 61.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.0e-258 897.5 956 49.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.7e-248 862.8 626 71.1
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.8e-236 823.5 499 80.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.3e-234 817.4 634 64.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.4e-220 770.0 975 47.6
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.0e-174 617.5 615 53.5
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.1e-171 607.4 429 71.6
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.4e-150 537.0 303 85.5
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 5.0e-133 479.9 386 63.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.0e-133 479.9 311 76.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.6e-83 315.5 297 58.9
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 6.8e-82 310.1 244 63.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 5.3e-66 257.3 136 85.3
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.4e-63 248.4 205 62.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 3.5e-46 191.4 138 65.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.8e-35 155.2 184 47.8
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.1e-34 151.4 108 64.8
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 6.5e-32 144.1 156 50.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.6e-30 138.3 72 87.5
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.6e-28 132.1 139 50.4
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.8e-26 125.9 97 64.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.2e-22 113.2 85 65.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 3.5e-17 95.1 146 41.8
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 5.5e-15 87.8 47 91.5
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.4e-13 83.2 49 73.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.1e-10 73.6 76 46.1
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 7.7e-09 67.4 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.5e-08 64.3 39 76.9


User provided reference genes

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