Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 4.9e-41 170.6 82 100.0
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.0e-38 161.4 81 93.8
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 3.1e-35 151.4 78 91.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 4.0e-35 151.0 81 87.7
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.2e-34 149.4 77 89.6
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.6e-34 148.3 81 82.7
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 2.6e-34 148.3 78 87.2
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 7.6e-34 146.7 78 85.9
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.9e-34 146.4 78 85.9
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 9.9e-34 146.4 79 86.1
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.3e-33 146.0 78 85.9
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.7e-33 145.6 78 84.6
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 87.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 85.9
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 84.6
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.9e-33 144.8 78 85.9
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 85.9
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 83.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 3.8e-33 144.4 78 83.3
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 3.8e-33 144.4 81 81.5
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 4.9e-33 144.1 75 89.3
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 4.9e-33 144.1 77 84.4
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.4e-33 143.7 78 84.6
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.4e-33 143.7 78 84.6
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 8.4e-33 143.3 78 83.3
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.4e-33 143.3 78 83.3
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 8.4e-33 143.3 81 81.5
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.1e-32 142.9 75 88.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 84.4
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 1.1e-32 142.9 79 83.5
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 82.1
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.4e-32 142.5 78 82.1
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 83.3
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 83.3
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 83.3
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 1.9e-32 142.1 77 84.4
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.9e-32 142.1 78 82.1
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.4e-32 141.7 78 83.3
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 2.4e-32 141.7 77 84.4
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 2.4e-32 141.7 82 82.9
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 2.4e-32 141.7 78 84.6
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.2e-32 141.4 77 83.1
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 4.2e-32 141.0 78 80.8
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.2e-32 141.0 79 83.5
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 4.2e-32 141.0 78 80.8
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 4.2e-32 141.0 78 80.8
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.4e-32 140.6 79 81.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 5.4e-32 140.6 78 80.8
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 7.1e-32 140.2 77 81.8
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 7.1e-32 140.2 78 83.3
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 9.3e-32 139.8 78 79.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 9.3e-32 139.8 77 81.8
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 9.3e-32 139.8 77 81.8
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 80.5
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.2e-31 139.4 78 83.3
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.6e-31 139.0 77 83.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.6e-31 139.0 83 79.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 2.7e-31 138.3 77 84.4
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 2.7e-31 138.3 77 80.5
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 2.7e-31 138.3 75 84.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 2.7e-31 138.3 78 79.5
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 3.5e-31 137.9 78 79.5
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 4.6e-31 137.5 75 82.7
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 6.0e-31 137.1 77 81.8
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 6.0e-31 137.1 78 76.9
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 6.0e-31 137.1 78 82.1
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.0e-30 136.3 75 81.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.0e-30 136.3 75 82.7
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.0e-30 136.3 79 79.7
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.3e-30 136.0 75 80.0
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 1.3e-30 136.0 78 79.5
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.7e-30 135.6 77 79.2
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.7e-30 135.6 77 79.2
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 80.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 80.0
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 81.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 2.3e-30 135.2 77 79.2
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.3e-30 135.2 75 81.3
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 3.0e-30 134.8 75 80.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 3.0e-30 134.8 75 80.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 3.0e-30 134.8 75 80.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 6.6e-30 133.7 75 80.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 6.6e-30 133.7 77 77.9
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 6.6e-30 133.7 78 74.4
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 80.8
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.1e-29 132.9 78 80.8
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 1.9e-29 132.1 82 75.6
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.9e-29 132.1 92 69.6
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 4.3e-29 131.0 75 80.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-29 130.6 75 80.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 5.6e-29 130.6 75 80.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 9.6e-29 129.8 75 78.7
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 2.1e-28 128.6 94 66.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 6.2e-28 127.1 78 73.1
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-27 125.9 78 78.2
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.0e-26 122.1 113 54.9
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 9.9e-26 119.8 66 83.3
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 2.2e-25 118.6 67 83.6
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.9e-25 117.5 67 80.6
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-24 115.9 64 84.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.4e-24 115.2 74 70.3
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-24 114.8 61 80.3
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-23 112.8 67 79.1
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.1e-23 112.1 64 81.2
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 3.5e-23 111.3 67 76.1
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 3.5e-23 111.3 68 73.5
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.6e-23 110.9 69 78.3
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.0e-23 110.5 69 76.8
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 6.0e-23 110.5 64 79.7
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.3e-22 109.4 67 74.6
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.8e-22 109.0 61 82.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 2.3e-22 108.6 68 73.5
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.9e-22 107.8 66 77.3
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 2.5e-21 105.1 50 86.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 8.1e-20 100.1 64 78.1
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.1e-19 99.8 64 76.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-19 99.4 62 71.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.4e-19 99.4 62 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.4e-19 98.6 77 58.4
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.4e-19 98.6 65 70.8
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 4.5e-18 94.4 61 68.9
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 4.5e-18 94.4 61 68.9
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 7.6e-18 93.6 48 79.2
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 7.6e-18 93.6 48 79.2
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 4.9e-17 90.9 73 60.3
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 3.2e-16 88.2 66 62.1
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 4.2e-16 87.8 55 74.5
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.8e-11 72.4 35 82.9
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 9.0e-11 70.1 50 62.0
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.6e-10 68.6 60 58.3
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 1.3e-09 66.2 71 39.4
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.7e-09 65.9 39 84.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 5.0e-09 64.3 36 69.4
Cre16.g682587 Chlamydomonas reinhardtii HOM05D005881 ORTHO05D007298 2.5e-08 62.0 80 40.0
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.2e-07 59.7 39 59.0


User provided reference genes

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