Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 5.3e-56 220.7 106 100.0
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 8.8e-51 203.4 107 93.5
Manes.10G120700 Manihot esculenta HOM05D021322 ORTHO05D001895 3.6e-28 128.3 108 61.1
Manes.10G120901 Manihot esculenta HOM05D021322 ORTHO05D001895 1.4e-27 126.3 104 60.6
Manes.10G125000 Manihot esculenta HOM05D021322 ORTHO05D001895 2.0e-26 122.5 104 57.7
Manes.10G124900 Manihot esculenta HOM05D021322 ORTHO05D001895 3.4e-26 121.7 108 58.3
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.7e-15 85.5 104 40.4
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 6.0e-15 84.3 104 41.3
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-15 84.0 94 45.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-14 83.6 105 42.9
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 8.6e-14 80.5 105 42.9
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-13 79.7 104 38.5
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.5e-13 79.0 104 38.5
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.5e-13 79.0 104 38.5
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-13 78.6 94 40.4
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-13 78.6 94 40.4
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-13 78.6 104 38.5
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 5.6e-13 77.8 101 41.6
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.3e-13 77.4 90 43.3
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 7.3e-13 77.4 94 41.5
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-12 76.6 104 37.5
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.6e-12 76.3 109 38.5
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.7e-12 74.7 102 38.2
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.2e-12 74.3 106 36.8
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 1.8e-11 72.8 103 38.8
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-11 72.8 106 39.6
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-11 72.8 102 36.3
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.2e-11 71.2 103 35.9
Potri.003G010499 Populus trichocarpa HOM05D011361 ORTHO05D015735 5.2e-11 71.2 104 40.4
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 5.2e-11 71.2 100 36.0
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.8e-11 70.9 106 35.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.8e-11 70.9 106 35.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-11 70.5 100 37.0
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-10 70.1 104 37.5
Sabra03G0005600 Salix brachista HOM05D011361 ORTHO05D015735 1.2e-10 70.1 105 40.0
Sabra03G0005700 Salix brachista HOM05D011361 ORTHO05D015735 1.2e-10 70.1 105 40.0
Potri.003G010565 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.5e-10 69.7 105 38.1
Potri.003G010598 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.5e-10 69.7 105 38.1
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-10 69.3 106 37.7
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-10 68.9 105 36.2
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-10 68.6 99 35.4
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-10 68.6 99 35.4
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-10 68.6 99 35.4
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 3.4e-10 68.6 105 35.2
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-10 68.2 103 40.8
Potri.003G010433 Populus trichocarpa HOM05D011361 ORTHO05D015735 4.4e-10 68.2 106 38.7
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.6e-10 67.4 105 37.1
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.6e-10 67.4 103 39.8
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.6e-10 67.4 105 38.1
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.6e-10 67.4 93 38.7
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.9e-10 67.0 105 40.0
Potri.003G010466 Populus trichocarpa HOM05D011361 ORTHO05D015735 9.9e-10 67.0 105 37.1
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 9.9e-10 67.0 93 44.1
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 1.3e-09 66.6 104 38.5
Potri.003G010730 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.3e-09 66.6 111 36.9
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-09 66.6 94 40.4
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-09 66.2 105 37.1
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-09 65.9 100 35.0
Potri.003G010664 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.2e-09 65.9 115 37.4
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 2.9e-09 65.5 106 39.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-09 65.5 100 33.0
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.9e-09 64.7 100 34.0
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.4e-09 64.3 100 34.0
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.4e-09 64.3 94 36.2
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 8.4e-09 63.9 104 36.5
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-08 63.5 90 34.4
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 1.1e-08 63.5 100 35.0
Potri.003G010532 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.1e-08 63.5 106 35.8
Sabra03G0005400 Salix brachista HOM05D011361 ORTHO05D015735 1.1e-08 63.5 100 37.0
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 1.4e-08 63.2 104 31.7
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 1.4e-08 63.2 104 36.5
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-08 62.8 105 27.6
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.4e-08 62.4 104 36.5
Potri.004G219600 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-08 62.0 106 34.0
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 5.4e-08 61.2 100 34.0
Potri.004G220300 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.4e-08 61.2 106 34.0
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.4e-08 61.2 104 36.5
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.4e-08 61.2 104 36.5
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 5.4e-08 61.2 104 35.6
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.1e-08 60.8 106 35.8
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 7.1e-08 60.8 104 32.7
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.1e-08 60.8 107 29.0
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 9.2e-08 60.5 101 32.7
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 9.2e-08 60.5 102 32.4
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.2e-07 60.1 104 32.7
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-07 60.1 102 35.3
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 2.1e-07 59.3 104 31.7
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.1e-07 59.3 102 31.4
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-07 58.9 73 42.5
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.7e-07 58.9 104 31.7
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-07 58.5 106 32.1
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-07 58.5 104 33.7
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-07 58.5 104 33.7
Gohir.D12G026700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-07 58.5 106 32.1
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.6e-07 58.2 105 33.3
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.6e-07 58.2 102 32.4
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 4.6e-07 58.2 104 31.7
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.0e-07 57.8 104 34.6
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.0e-07 57.8 106 33.0
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.0e-07 57.8 104 33.7
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 6.0e-07 57.8 104 33.7
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.3e-06 55.8 106 34.9
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.3e-06 55.8 102 31.4
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-06 55.5 104 33.7
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.0e-06 55.5 106 34.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-06 55.5 104 33.7
Atru.chr3.613 Acer truncatum HOM05D002599 ORTHO05D001895 3.9e-06 55.1 102 37.3
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.6e-06 54.3 106 32.1
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 8.6e-06 53.9 104 31.7


User provided reference genes

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