Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 1.2e-94 349.7 168 100.0
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 2.4e-87 325.5 168 93.5
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 2.3e-29 132.9 117 53.8
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 6.8e-29 131.3 116 56.9
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.0e-28 129.8 118 55.9
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 3.4e-28 129.0 116 56.0
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 8.3e-27 124.4 119 50.4
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 2.4e-26 122.9 119 50.4
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 7.0e-26 121.3 117 51.3
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.6e-25 120.2 117 51.3
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.6e-25 120.2 117 51.3
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 3.5e-25 119.0 117 52.1
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 2.2e-24 116.3 117 53.0
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 2.2e-24 116.3 117 49.6
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 2.9e-24 115.9 117 49.6
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.1e-23 114.0 121 49.6
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 7.2e-23 111.3 124 47.6
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 7.2e-23 111.3 121 48.8
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.2e-22 110.5 117 47.9
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.4e-21 107.1 122 50.8
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 5.2e-21 105.1 120 48.3
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 3.4e-20 102.4 102 51.0
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 7.7e-17 91.3 125 40.8
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.0e-16 90.9 124 41.9
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.0e-16 90.9 125 40.8
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 2.3e-16 89.7 125 40.0
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.0e-16 88.6 121 42.1
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.6e-16 88.2 127 40.2
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.6e-16 88.2 127 40.2
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 8.6e-16 87.8 121 43.0
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-15 87.0 124 39.5
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.9e-15 86.7 124 39.5
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-15 85.5 120 41.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-15 84.7 120 40.0
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 7.3e-15 84.7 128 35.9
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-14 82.8 116 42.2
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 6.1e-14 81.6 127 36.2
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.4e-13 80.5 117 33.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.2e-12 77.4 119 32.8
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.5e-12 77.0 119 32.8
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.0e-12 76.6 119 32.8
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-12 76.6 117 35.9
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.4e-12 75.9 121 37.2
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.4e-12 75.9 122 35.2
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-12 75.5 117 31.6
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-12 75.5 117 31.6
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-12 75.5 119 31.9
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-12 75.5 117 35.9
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.7e-12 75.1 119 31.9
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 5.7e-12 75.1 115 37.4
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.7e-12 75.1 123 36.6
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 5.7e-12 75.1 115 38.3
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 9.8e-12 74.3 121 34.7
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.8e-12 74.3 112 33.9
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 9.8e-12 74.3 109 37.6
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 9.8e-12 74.3 115 39.1
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.3e-11 73.9 117 36.8
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-11 73.9 121 34.7
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.7e-11 73.6 118 33.1
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.2e-11 73.2 113 35.4
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.9e-11 72.8 122 36.1
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.7e-11 72.4 118 32.2
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.9e-11 72.0 113 36.3
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 6.4e-11 71.6 122 34.4
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.4e-11 71.6 115 34.8
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.4e-11 71.6 147 32.0
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.3e-11 71.2 119 35.3
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 8.3e-11 71.2 118 33.1
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 8.3e-11 71.2 111 36.9
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-10 70.5 113 34.5
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-10 70.1 122 30.3
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-10 70.1 109 34.9
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-10 69.7 110 34.5
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 2.4e-10 69.7 128 35.2
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.2e-10 69.3 119 37.0
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.2e-10 69.3 118 34.7
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.1e-10 68.9 118 35.6
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.1e-10 68.9 118 34.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.1e-10 68.9 120 34.2
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 4.1e-10 68.9 115 34.8
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.4e-10 68.6 133 35.3
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.4e-10 68.6 117 29.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.4e-10 68.6 120 32.5
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.4e-10 68.6 119 33.6
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-10 68.2 112 35.7
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 7.0e-10 68.2 115 34.8
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 7.0e-10 68.2 118 33.9
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.2e-10 67.8 117 35.0
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.2e-10 67.8 118 33.9
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.2e-10 67.8 111 33.3
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 9.2e-10 67.8 126 31.7
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.2e-09 67.4 117 29.9
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-09 67.4 116 34.5
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-09 67.4 116 34.5
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-09 67.4 115 33.9
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-09 65.9 119 30.3
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-09 65.9 118 35.6
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-09 65.9 121 33.1
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-09 65.9 114 32.5
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 4.6e-09 65.5 107 32.7
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 5.9e-09 65.1 120 32.5
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.9e-09 65.1 121 33.1
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.9e-09 65.1 111 33.3
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.8e-09 64.7 118 34.7
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-09 64.7 110 32.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 7.8e-09 64.7 118 35.6
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-08 64.3 119 30.3
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-08 64.3 119 36.1
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-08 63.5 117 34.2
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-08 63.5 117 34.2
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-08 63.5 117 34.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-08 63.2 112 33.9
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-08 62.4 116 31.9
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-08 62.4 133 33.8
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-08 62.4 120 34.2
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-08 62.4 111 32.4
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.6e-08 61.6 90 34.4
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.1e-07 60.8 124 27.4
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-07 60.8 111 32.4
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-07 60.5 124 27.4
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-07 60.5 117 29.1
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-07 60.1 122 32.8
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-07 60.1 114 30.7
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-07 60.1 91 40.7
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 5.6e-07 58.5 102 30.4
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 5.6e-07 58.5 112 30.4
Gohir.D02G213400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-06 57.4 87 37.9
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 2.1e-06 56.6 84 38.1
Gohir.D02G213300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-06 56.2 87 36.8
Sabra01G0164500 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-06 56.2 96 30.2
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-06 56.2 110 29.1
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 3.6e-06 55.8 84 38.1
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-06 55.8 103 35.0
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.2e-06 55.1 102 32.4


User provided reference genes

Program Settings